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SRX23383599: GSM8033638: Young Fischer344 rat retina-02; Rattus norvegicus; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 24.1M spots, 7.3G bases, 3Gb downloads

External Id: GSM8033638_r1
Submitted by: Ophthalmology, University of Pittsburgh
Study: Transcriptome comparison between Old vs young rat retinae
show Abstracthide Abstract
Visual decline in the elderly is often attributable to retinal aging, which predisposes the tissue to pathologies including age-related macular degeneration. Currently, effective oral pharmacological interventions for retinal degeneration are limited. Utilizing the Fischer 344 rat model of aging, we evaluated the efficacy of 8-aminoguanine (8-AG), a compound previously shown for multi-organ protection, against age-related retinal degeneration. Remarkably, administration of 8-AG at a dosage of 5 mg/kg body weight via drinking water from 22 months of age for a duration of 8 weeks resulted in substantial retinal preservation evidenced by an increase in retinal thickness, a greater number of photoreceptors with longer outer segments, and enhanced electroretinogram signals. RNA sequencing and subsequent analyses revealed pronounced anti-inflammatory effects by 8-AG on both adaptive and innate immune responses within the aged retina. Overall design: To compare the transcriptome changes affected by aging and by 8-AG treatment, we collected retina and RPE/choroids separetly from young (4 months old), aged (24 months old) and 8-AG treated (24 months old) Fischer344 rats. Specifically, 5 mg/kg body weight of 8-AG was treated daily to the aged rats starting at 22 monthls of age by suppementing the compound in the drinking water. The drinking water was refresehd daily and the treatment lasted 8 weeks and animals were euthanized at 24 months of age for tissue collection. mRNA seq was performed for both retina and RPE/choroids samples.
Sample: Young Fischer344 rat retina-02
SAMN39599610 • SRS20245089 • All experiments • All runs
Library:
Name: GSM8033638
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Each eye ball was opened by removing the cornea, iris and lens, and the neural retina was firstly isolated and put into RNAzol immediately and flash frozen in liquid nitrogen. After the neural retina being taken, RPE/choroids were isolated by washing the remaining eye cup with RNA zol and flash frozed in liquid nitrogen. Total RNA was isolated follwing manufacturer's instructions of RNAzol (Sigma-Aldrich, Saint-Louis, MO). Only samples with RNA integrity number (RIN) > 7 was selected for poly-A captured mRNA library preparation. To compare old vs. young and 8-AG treated aged vs untreated aged neural retinae, mRNA libraries were prepared using poly-A capturation (N=3). For RNA from RPE/choroids, due to low RNA yield, mRNA lirbaries were genereated using polyA selection with enrichment for full-length transcripts.
Runs: 1 run, 24.1M spots, 7.3G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR2771753524,149,1267.3G3Gb2024-05-31

ID:
31603869

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