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SRX22847473: GSM7965383: pig epididymis corpus; Sus scrofa; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 1.7G spots, 221.9G bases, 143.4Gb downloads

External Id: GSM7965383_r1
Submitted by: JunLin Song
Study: The Single-Cell Landscape of Spermioteleosis in Mouse and Pig
show Abstracthide Abstract
Spermatozoa acquired motility and matured in epididymis after production in testis; however, the characteristics of sperm development between species remain poorly understood. In this study, we constructed a single-cell RNA dataset to investigate spermatogenesis characteristics between mouse and pig. This approach enabled us to analyze cell compositions in both testicular and epididymal tissues, providing insights into changes occurring during meiosis and spermiogenesis in mouse and pig. Additionally, distinct gene expression signatures associated with various spermatogenic cell types were identified. The findings revealed differences in testicular cell clusters between these two species. Furthermore, different regions of the epididymis displayed unique gene expression patterns among its epithelial cells. Notably, regional gene expression patterns were observed within principal cell clusters of mouse epididymis as well. Moreover, we analyzed specific characteristics of differentially expressed genes related to the epididymis in mouse and pig, identifying potential marker genes associated with sperm development and maturation for each species studied. Overall design: Testicular and epididymal tissues were collected from three sexually mature male C57BL/6J mice and three sexually mature Landrace pigs for single cell sequencing to compare the differences in testicular spermatogonesis and epididymal maturation between these two species
Sample: pig epididymis corpus
SAMN38753409 • SRS19827102 • All experiments • All runs
Organism: Sus scrofa
Library:
Name: GSM7965383
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: cDNA
Layout: PAIRED
Construction protocol: The mice and pigs' testis were cut into pieces. The mice and pigs' epididymis were collected and divided into epididymis caput, epididymis corpus and epididymis cauda. Cut the fresh tissue into pieces, transfer to the 0.2% collagenase IV and DNAse I digestion solution, and incubate at 37°C for 15 min. Self-designed using MGI C4 droplet generation device, through efficient mRNA capture magnetic beads and droplet recognition microbeads and single-cell RNA library preparation kit The single-cell (nuclear) suspension can be quickly prepared into the library corresponding to the sequencing platform. The DNBelab C library contains cDNA Library, which are derived from MRNA-capturing magnetic beads and droplet recognition microbeads, respectively.
Runs: 1 run, 1.7G spots, 221.9G bases, 143.4Gb
Run# of Spots# of BasesSizePublished
SRR271665921,706,567,755221.9G143.4Gb2024-04-12

ID:
30895689

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