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SRX22846537: GSM7964571: Animal_A12X028_Baseline_D0; Macaca mulatta; RNA-Seq
1 DNBSEQ (DNBSEQ-G400) run: 36.2M spots, 10.9G bases, 6.5Gb downloads

External Id: GSM7964571_r1
Submitted by: Bali Pulendran, Institute for Immunity, Transplantation and Infection, Stanford University
Study: Immunological assessment of multiple clinical-stage adjuvants to induce durable immune responses to the R21 malaria vaccine
show Abstracthide Abstract
Authorization of the Matrix-M-adjuvanted R21 vaccine by three countries and its subsequent endorsement by the World Health Organization (WHO) for malaria prevention in children is a milestone in the fight against malaria. Yet, to meet the unprecedented demand for malarial vaccines, there is a pressing need for additional adjuvants that induce robust and durable vaccine-induced immunity. Here, we performed a comparative assessment of three clinically relevant adjuvants (an alum formulation of the TLR7/8 agonist 3M-052 (3M-052+Alum), the TLR4 agonist GLA-LSQ (GLA in liposome QS-21 formulation), and Matrix-M, the currently approved adjuvant for R21) for their capacity to induce durable immune responses to the R21 malaria vaccine in non-human primates. Immunization of macaques with R21 adjuvanted with 3M-052+Alum on a 0, 8, and 24-week schedule elicited anti-circumsporozoite antibody responses comparable in magnitude to the R21/Matrix-M vaccine and persisted up to 72 weeks with a half-life of 337 (264 – 459) days. A booster dose at 72 weeks induced an antigen-specific recall response, similar to the R21/Matrix-M vaccination. In contrast, R21/GLA-LSQ immunization induced a considerably lower and short-lived response. Consistent with the durability of serum antibody responses, Matrix-M and 3M-052+Alum induced long-lived plasma cells in the bone marrow and other tissues, including the spleen, but GLA-LSQ stimulated only short-lived plasmablasts. Finally, we show distinct innate immune signatures early after vaccination with these adjuvants. While 3M-052+Alum stimulated potent and persistent antiviral transcriptional and cytokine signatures after primary and booster immunizations, Matrix-M induced an enhanced expression of interferon- and Th2-related signatures more highly after the booster vaccination. Collectively, these findings provide a comparative database on the immune responses of three clinically relevant adjuvants with R21 and highlight the promise of 3M-052+Alum as an additional adjuvant for the R21 malaria vaccine. Overall design: The study involved six groups of 6 - 10 male Rhesus macaques per group. All groups received four doses of 5 ?g R21 antigen with an adjuvant, as shown in Fig. 1A. The first two groups were immunized with R21 plus 30 or 10 ?g 3M-052 formulated in 0.5 mg Aluminum hydroxide subcutaneously at weeks 0, 4, 8 and 62. The third group was immunized with R21 plus 30 ?g 3M-052 formulated in 0.5 mg Aluminum hydroxide via the intramuscular route at the same time points (weeks 0, 4, 8, and 62) as a route comparison with group 1. Groups 4 and 5 were administered with R21 plus GLA-LSQ (25 ?g + 10 ?g QS-21) and 50 ?g Matrix-M via intramuscular route, respectively. The R21/MM group was immunized at weeks 0, 4, 8, and 62, comparable with groups 1, 2, and 3. The R21/GLA-LSQ group was immunized at weeks 0, 4, 8 and 72. Group 6 was immunized with 30 ?g 3M-052 using a longer interval between immunizations (weeks 0, 8, 24, and 72) to be consistent with our previous studies using HIV antigens (16-18). In summary, the study was designed to compare multiple parameters. Groups 1 and 2 served for dose comparison; groups 3, 4, and 5 for adjuvant comparison; and groups 3 and 6 for a comparison of interval between vaccinations. The animals were subjected to longitudinal sampling of blood and bone marrow for the analysis of immunogenicity and durability of immune responses
Sample: Animal_A12X028_Baseline_D0
SAMN38752491 • SRS19826173 • All experiments • All runs
Organism: Macaca mulatta
Library:
Name: GSM7964571
Instrument: DNBSEQ-G400
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: The blood Paxgene tubes were stored until all samples were collected. The whole blood samples were then subjected to RNA extraction using the Thermo Fisher “MagMAX™ for Stabilized Blood Tubes RNA Isolation Kit, compatible with PAXgene Blood RNA Tubes.” Sample QC was performed with Agilent 2100 bioanalyzer to identify samples with RIN > 7. Qualified RNA from each sample was processed with non-stranded mRNAseq library prep (with globin mRNA removal). In brief, mRNA molecules were purified from total RNA using oligo(dT)-attached magnetic beads. Globin mRNA was depleted using globin mRNA probes. mRNA molecules were fragmented into small pieces using a fragmentation reagent, and the first-strand cDNA was generated using random hexamer-primed reverse transcription, followed by a second-strand cDNA synthesis. They were then end-repaired, followed by A-tailing and adapter ligation reactions. The library was subsequently PCR enriched and purified by the Ampure XP bead size selection method. All libraries are quantified by Agilent Technologies 2100 bioanalyzer. The double-stranded PCR products were heat-denatured and circularized by the splint oligo sequence. The single-strand circle DNA (ssCir DNA) was formatted as the final library. The library was amplified with phi29 to make DNA nanoball (DNB) which had more than 300 copies of one molecular. The DNBs were loaded into the patterned nanoarray and paired-end 150-base reads were generated by sequencing using the sequencer G400.
Runs: 1 run, 36.2M spots, 10.9G bases, 6.5Gb
Run# of Spots# of BasesSizePublished
SRR2716558236,232,16610.9G6.5Gb2024-06-01

ID:
30894753

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