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SRX22834968: GSM7963973: E14.5 Male PGC RNAseq Tet1-V2; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 1000) run: 29.9M spots, 1.9G bases, 846.7Mb downloads

External Id: GSM7963973_r1
Submitted by: Bartolomei Lab, Cell and Developmental Biology, University of Pennsylvania
Study: TET1 catalytic activity is required for reprogrammign of imprinting control regions and the patterning of sperm-specific hypomethylated regions [RNA-Seq]
show Abstracthide Abstract
DNA methylation erasure is required for mammalian primordial germ cell reprogramming. TET enzymes iteratively oxidize 5-methylcytosine to generate 5-hyroxymethylcytosine (5hmC), 5-formylcytosine, and 5-carboxycytosine to facilitate active genome demethylation. Whether these bases are required to promote replication-coupled dilution or activate base excision repair during germline reprogramming remains unresolved due to the lack of genetic models that decouple TET1 activities. Here, we generated two mouse lines expressing catalytically inactive TET1 (Tet1-HxD) and TET1 that stalls at 5hmC (Tet1-V). This experiment was done to conduct genome wide DNA methylation profiling of catalytically inactive Tet1HxD/HxD sperm, 5hmC stalling Tet1V/V sperm, KO Tet1-/- sperm, and WT sperm. Sperm samples were collected from adult males (>10 week). Overall design: RNAseq from E14.5 Male PGCs that was sorted using Oct4-GFP reporter
Sample: E14.5 Male PGC RNAseq Tet1-V2
SAMN38732742 • SRS19815393 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7963973
Instrument: NextSeq 1000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extrated using Quick RNA Microprep Kit by Zymo Research from 5000 cells mRNA library was generated using Oligo d(T)25 RNA Magnetic Isolation Module followed by UltraII RNA Library Prep Kit (NEB) following manufacturer's protocol
Runs: 1 run, 29.9M spots, 1.9G bases, 846.7Mb
Run# of Spots# of BasesSizePublished
SRR2715389129,930,9001.9G846.7Mb2024-02-26

ID:
30876931

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