Name: GSM7887091
Instrument: Illumina NovaSeq 6000
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: 50,000 retinal ganglion cells were pelleted by centrifugation (500 g, 5 min, 4°C), washed with ice-cold PBS, pelleted again by centrifugation (500 g, 5 min, 4°C), and lysed in 50 μl ice-cold lysis buffer. Immediately after lysis, nuclei were pelleted by centrifugation (500 g, 10 min, 4°C), resuspended in 50 μl transposase reaction mix (Tagment DNA TDE1 Enzyme and Buffer Kits, Illumina 20034197) and incubated at 37°C for 30 min. After the transposition reaction, the product was purified with the DNA Clean & Concentrator-5 Kit (Zymo Research D4003). 20 μl tagmented DNA was PCR amplified with NEBNext High-Fidelity PCR Master mix (New England Biolabs M0541) and forward and reverse UDI primers. Amplification was first performed for 5 cycles, following which 5 μl of each partially amplified library was used to perform qPCR to determine the additional number of PCR cycles needed for each library. Final amplified libraries were purified using 1.1× Ampure XP bead purification (Beckman Coulter A63880).