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SRX22012692: GSM7830292: anther, Mv 17-09 treated rep3; Triticum aestivum; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 24.8M spots, 7.5G bases, 2.3Gb downloads

External Id: GSM7830292_r1
Submitted by: Centre for Agricultural Research
Study: Heat stress during male meiosis impairs cytoskeletal organization, spindle assembly and tapetum degeneration in wheat
show Abstracthide Abstract
We demonstrate here that heat stress severely alters the cytoskeletal configuration, cell structure, and global gene expression in male meiocytes and the tapetum layer, in a genotype-dependent manner. 'Ellvis', a heat-tolerant winter wheat cultivar, showed high fertility and only scarce structural aberrations upon exposure to high temperature. In addition, heat shock genes and genes involved in the alleviation of reactive oxygen species were significantly upregulated in 'Ellvis' and the expression of meiosis-specific and important developmental genes showed high stability in this cultivar. In the heat-sensitive Mv 17-09, however, genes participating in cytoskeletal fiber nucleation, the spindle assembly checkpoint (SAC) genes, and tapetum-specific developmental regulators were all downregulated. These alterations may be related to the decreased cytoskeleton content, frequent micronuclei formation, and the erroneous persistence of the tapetum layer observed in the sensitive genotype. Overall design: Control and heat stressed (35 °C for 24h at the time of meiosis) anthers of Mv 17-09 and Ellvis cultivars were subjected to RNA seq to reveal the transcriptional background of heat susceptibility of meiosis.
Sample: anther, Mv 17-09 treated rep3
SAMN37706893 • SRS19086149 • All experiments • All runs
Library:
Name: GSM7830292
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Anther tissue was ground using a mortar and pestle in liquid nitrogen. Total RNA was extracted using Direct-zol™ RNA MiniPrep Kit, following the manufacturer's protocol (Zymo Research, Irvine, CA, USA). The libraries for RNA-seq were prepared with the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswitch, MA, USA). Briefly, ribosomal RNA was depleted from 400 ng of total RNA using the QIAseq FastSelect rRNA Plant Kit (Qiagen, Hilden, Germany). The depleted RNA was fragmented, end-prepped, adapter ligated, and the libraries were amplified according to the manufacturer's instructions.
Runs: 1 run, 24.8M spots, 7.5G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR2630419924,797,2547.5G2.3Gb2023-12-21

ID:
29925905

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