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SRX21592641: GSM7750363: AAU_B_I; Aurelia aurita; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 19M spots, 4.5G bases, 1.4Gb downloads

External Id: GSM7750363_r1
Submitted by: Dr Vengamanaidu Modepalli, Cell and Molecular, Marine Biological Association of the UK
Study: Reconstructing the gene regulatory network that shaped the evolution of larval sensory structure with a long ciliary tuft in Cnidaria.
show Abstracthide Abstract
Cnidarians are the only non-bilaterian group to evolve ciliated larvae with an apical sensory organ integrated with neurons, possibly homologous to the bilaterians. Within cnidarians, an apical organ with a ciliary tuft is identified only in sea anemones. Whether this apical tuft has evolved independently in anthozoans or alternatively originated in the eumetazoans and was lost independently in specific groups of cnidarians and bilaterians is uncertain. Overall design: Here, we generated transcriptomes of the apical domain during the planula stage of four species representing three key groups of cnidarians: Aurelia aurita (medusozoan Scyphozoa), Nematostella vectensis (Actiniaria), and Acropora millepora & Acropora tenuis (Scleractinia). Using an ortholog-analysis approach, we revealed the active and dynamic anteroposterior gene regulatory network in all three cnidarian groups.
Sample: AAU_B_I
SAMN37232816 • SRS18770156 • All experiments • All runs
Organism: Aurelia aurita
Library:
Name: GSM7750363
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: For RNA isolation, due to the sheer size, samples collected from multiple batches were combined to acquire an adequate amount of RNA for sequencing. Total RNA was isolated using the TRI Reagent® according to the manufacturer's protocol. RNA quality was assessed using Agilent RNA 6000 Nano Kit on Agilent 2100 Bioanalyzer (Agilent, USA), and samples with RNA integrity number ≥ 8.0 were used for sequencing. The CORALL RNA-Seq Library Prep Kit (Lexogen GmbH) was used for library preparation. Before sequencing, the libraries were pre-assessed by Agilent High Sensitivity DNA Kit (Agilent, USA) and quantified using Qubit™ 1X dsDNA HS Assay Kit (Invitrogen™). The sequencing was outsourced (GENEWIZ Illumina NovaSeq™ 2x150 bp sequencing), generating 15 million paired-end reads per replicate.
Runs: 1 run, 19M spots, 4.5G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR2587133618,953,5534.5G1.4Gb2024-01-17

ID:
29148484

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