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SRX21515766: GSM7745639: GS_77_T0; Sus scrofa; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 84.1M spots, 8.6G bases, 2.5Gb downloads

External Id: GSM7745639_r1
Submitted by: VIM, INRA
Study: Ex vivo lung perfusion with dialysis in pig (timepoints T0H, T6H and T12H)
show Abstracthide Abstract
Ex vivo lung perfusion (EVLP) has extended the number of transplantable lungs by reconditioning marginal organs. However EVLP is performed at 37°C without homeostatic regulation leading to metabolic wastes accumulation in the perfusate, and as a corrective measure, the costly perfusate is repeatedly replaced during the standard of care procedure. As an interesting alternative, a hemodialyzer could be placed on the EVLP circuit, that was previously shown to rebalance the perfusate composition, maintain lung function and viability without appearing to impact the global gene expression in the lung. Here, we assessed the biological effects of a hemodialyzer during EVLP by performing biochemical and refined functional genomic analyses over a 12 h procedure in a pig model. We found that dialysis stabilized electrolytic and metabolic parameters of the perfusate but enhanced the gene expression and protein accumulation of several inflammatory cytokines, and promoted a genomic profile predicting higher endothelial activation already at 6 h and immune cytokine signaling at 12 h. Therefore epuration of EVLP with a dialyzer, while correcting features of perfusate composition and maintaining respiratory function, promotes inflammatory responses in the tissue. This finding suggests that modifying the metabolite composition of the perfusate by dialysis during EVLP can have detrimental effects on the tissue response and that this strategy should not be transferred as such to the clinic. Overall design: 2 groups : Gold standard EVLP (GS ; 5 pigs) vs Pediattric dialysis (PD ; 4 pigs) - 3 timepoints : T0H, T6H and T12H
Sample: GS_77_T0
SAMN37196864 • SRS18742931 • All experiments • All runs
Organism: Sus scrofa
Library:
Name: GSM7745639
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Arcturus PicoPure RNA isolation kit or Trizol + NucleoSpin RNA kit NextSeq 500 Mid output kit V2
Runs: 1 run, 84.1M spots, 8.6G bases, 2.5Gb
Run# of Spots# of BasesSizePublished
SRR2579350984,060,3488.6G2.5Gb2024-03-04

ID:
28999351

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