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SRX21375661: GSM7712099: RV-Decompensated_4; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 37.5M spots, 2.8G bases, 1.3Gb downloads

External Id: GSM7712099_r1
Submitted by: Soni Pullamsetti, Max Planck Institute
Study: Transcriptional profiling of human adaptive and maladaptive right ventricular remodeling
show Abstracthide Abstract
In this study, we performed molecular phenotyping of RV remodeling, by transcriptome analysis of RV tissue obtained from 40 patients. The unsupervised clustering analysis identified “early" and "late" subgroups within compensated and decompensated states, characterized by the expression of distinct signaling pathways, and different circulating levels of several ECM proteins in decompensated RV subgroups. Our study provides a resource for the subphenotyping of RV states, the identification of state-specific biomarkers, and potential therapeutic targets for RV dysfunction. Overall design: RNA sequencing was performed for RV tissues obtained from human patients clinically categorized as compensated RV (n=14), decompensated RV (n=13) and donor controls (n=13). Followed by additional clustering labels, A to E. Cluster A represent Normal group (n=24), Cluster B represent compensated RV group (n=4), Cluster C represent severe hypertrophic RV group (n=3), Cluster D represent early decompensated group (n=5), and Cluster E represent late decompensated group (n=4).
Sample: RV-Decompensated_4
SAMN36996272 • SRS18618778 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7712099
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Human RV tissues were manually dissected in cardiac biopsy or autopsy, according to the previously described protocol ( doi: 10.1161/CIRCULATIONAHA.120.047626 ), and Total RNA from each batch of RV samples were isolated separately using the RNeasy Mini Kit (Qiagen, Germantown, MA, USA) and snap-frozen. Purification of total RNA was performed as described in the RNeasy handbook, using DNase I digestion (RNase-Free DNase Set, Qiagen). Following the RNA integrity measurement, approximately 10 ng of total RNA were used as starting material for library preparation using the SMARTer® Stranded Total RNA-seq Kit - Pico Input Mammalian, following manufacturers' protocols
Runs: 1 run, 37.5M spots, 2.8G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR2564959737,542,8542.8G1.3Gb2023-09-29

ID:
28813887

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