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SRX21155589: GSM7660882: Sample32; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 36M spots, 10.9G bases, 3.4Gb downloads

External Id: GSM7660882_r1
Submitted by: Anschutz Campus - Sch of Med - Pulmonary Sciences, University of Colorado - Anschutz Medical Campus
Study: The impact of vaping on adolescent lung function and nasal epithelial gene expression [RNA-seq]
show Abstracthide Abstract
Electronic cigarette use (vaping) among adolescents is a pressing public health issue. We aimed to investigate the impact of vape use on lung function and nasal epithelial gene expression in adolescents. We hypothesized that vaping results in abnormal lung function and differential expression of inflammatory genes in the nasal epithelium of adolescent vape users in comparison to non-vape users. We assessed airflow obstruction with impulse oscillometry (IOS) and collected nasal epithelial brush samples for genome-wide gene expression and targeted DNA methylation analyses in middle and high school students in Colorado. Written informed consent was obtained from participants and Institutional Review Board approval was obtained. Vape users [mean age (standard deviation): 14.8 (1.4) years] reported vaping within the past 6 months while non-vape users [14.8 (1.4)] years did not report any vape use in the past 6 months. Mean airway resistance identified by the IOS R5 measure revealed that vape users (n=13) had higher values than non-vape users (n=37) [p=0.026]. Of 16,860 nasal epithelial genes tested, 7,136 were significantly differentially expressed between vape and non-vape users (false discovery rate (FDR) <0.05), after covariate adjustment. Enrichment analyses identified overexpression of inflammatory response genes and underexpression of ciliogenesis genes in vape users compared to non-vape users. DNA methylation analysis revealed that REXO1 (FDR=0.01) and CERK (FDR=0.06) were differentially methylated among vape users compared to non-vape users. Vaping during adolescence may increase airway resistance and dysresgulation of nasal epithelial genes, including genes involved in airway inflammation and ciliary function. Overall design: Gene expression profiling analysis for nasal-epithelial tissue swabs collected from 11 adolescents who self-reported vape use in the past 6 months and 36 adolescents who did not self-report vape use.
Sample: Sample32
SAMN36704281 • SRS18418106 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7660882
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using the Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA) and sequenced using Illumina chemistry (Nugen Universal Plus mRNASEQ kit [Redwood City, CA]; NovaSeq6000 [Illumina: San Diego, CA]) through the Genomics and Microarray Core at the University of Colorado Anschutz Medical Campus. Sequencing libraries will be prepared using the standard TruSeq RNA Sample Prep Kit v2 Protocol (Illumina, San Diego, CA).
Runs: 1 run, 36M spots, 10.9G bases, 3.4Gb
Run# of Spots# of BasesSizePublished
SRR2542060435,996,50510.9G3.4Gb2024-07-05

ID:
28590923

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