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SRX21063799: GSM7635571: Col-0 RNAseq ZT0 rep2; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 22.9M spots, 6.9G bases, 2Gb downloads

External Id: GSM7635571_r1
Submitted by: IBMCP (CSIC/UPV)
Study: Effect of the gi-2 mutation on Arabidopsis thaliana gene expression
PRJNA996130 • SRP450135 • All experiments • All runs
show Abstracthide Abstract
This study aimed to characterize the effect of GIGANTEA loss of function on gene expression in Arabidopsis thaliana seedlings genome-wide. To this end, transcriptomic analyses using high-throughput sequencing were carried out in Col-0 wildtype and gi-2 loss-of-function mutants. Overall design: Three biological replicates (n=40-60 seedlings each) of each wildtype (Col-0) and gi-2 seedlings were grown under short day photocycles for 7 days. Samples were collected at ZT 0 (whole seedlings).
Sample: Col-0 RNAseq ZT0 rep2
SAMN36521179 • SRS18333617 • All experiments • All runs
Organism: Arabidopsis thaliana
Library:
Name: GSM7635571
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated using the GeneJET Plant RNA Purification Kit (Thermo Scientific) and digested with DNase Max (Qiagen). Preparation of RNA library (non-directional 250~300 bp insert cDNA library (NEB))
Runs: 1 run, 22.9M spots, 6.9G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR2532156822,910,3736.9G2Gb2024-07-25

ID:
28498529

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