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SRX20970927: GSM7593090: 5 hour sample 2; Mus musculus; Streptococcus pyogenes NZ131; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 59.8M spots, 6G bases, 1.9Gb downloads

External Id: GSM7593090_r1
Submitted by: Horswill Laboratory, Department of Pediatrics, Section of Critical Care Medicine, University of Colorado
Study: Identifying genetic determinants of Streptococcus pyogenes-host interactions in a murine intact skin infection model
show Abstracthide Abstract
Streptococcus pyogenes is an obligate human pathobiont associated with many disease states. Here, we present a novel model of S. pyogenes infection using intact murine epithelium. From this model, we were able to perform RNA sequencing to evaluate the genetic changes undertaken by both the bacterium and host at 5 and 24 hours post infection. Analysis of these genomic data demonstrate that S. pyogenes undergoes significant genetic adaptation to successfully infect the murine epithelium, including changes to metabolism and activation of the Rgg2/Rgg3 quorum sensing (QS) system. Subsequent experiments demonstrate that an intact Rgg2/Rgg3 QS cascade is necessary to establish a stable superficial skin infection. Furthermore, activation of this pathway results in increased murine morbidity and increased bacterial burden on the skin. This phenotype is associated with gross changes to the murine skin, as well as histopathological evidence of inflammation. Taken together, these experiments offer a novel method to investigate S. pyogenes-epithelial interactions and demonstrate that a well-studied QS pathway is critical to a persistent infection. Overall design: To investigate gene expression assoicated with infection of intact murine skin by Streptococcus pyogenes, we obtained RNA from both mice and bacterium at 5 and 24 hours after infection. Dual RNAsequencing allowed for comparison of bacterial samples to their input control, as well as murine samples versus their uninfected control.
Sample: 5 hour sample 2
SAMN36398219 • SRS18247093 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7593090
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Skin was excised at indicated time point after euthanizing mice. Bead beating was used to lyse both murine and bacterial cells and RNA was extracted using the Qiagen RNAeasy kit. To obtain sufficient bacterial RNA, each sample represents 5 mice treated as technical replicates. Ribozero RNA depletion followed by Illumina stranded library preparation.
Runs: 1 run, 59.8M spots, 6G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR2522439659,752,4716G1.9Gb2023-07-17

ID:
28404712

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