U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX20960148: GSM7585199: RNA from liver from ST_OldHet3; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 22.1M spots, 6.6G bases, 485.6Mb downloads

External Id: GSM7585199_r1
Submitted by: Gladyshev Lab, Medicine/Genetics, Brigham and Women's Hospital, Harvard Medical School
Study: Gene expression changes in mice induced by parabiosis and recovery [RNA-seq]
show Abstracthide Abstract
Aging is classically conceptualized as an ever-increasing trajectory of damage accumulation and loss of function, leading to increases in morbidity and mortality. However, recent in vitro studies have raised the possibility of age reversal. We characterized several models in which biological age is perturbed. Heterochronic parabiosis and recovery from this procedure is one such example. Overall design: We studied a mouse model of heterochronic parabiosis. Mouse pairs (either age-mismatched, heterochronic; or age-matched, isochronic) were surgically joined and maintained for 1-3 months. After this period, a subset of mice were euthanized and tissues were collected for analysis, and another subset of pairs was surgically detached and allowed to recover for 2 months, after which tissues were collected. We sequenced RNA isolated from these samples to analyze gene expression changes.
Sample: RNA from liver from ST_OldHet3
SAMN36381367 • SRS18236420 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7585199
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was isolated from mouse tissues using the Ambion RNAqueous Total RNA Isolation Kit (Invitrogen). ~25 mg of solid tissue was used as starting material. Concentration of RNA samples was determined using the Qubit RNA HS assay kit (Invitrogen). Total RNA isolated as described above was checked for quality using an Agilent 2100 Bioanalyzer. Messenger RNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, the first strand cDNA was synthesized using random hexamer primers followed by the second strand cDNA synthesis. The library was ready after end repair, A-tailing, adapter ligation, size selection, amplification, and purification. The library was checked with Qubit and real-time PCR for quantification and bioanalyzer for size distribution detection.
Runs: 1 run, 22.1M spots, 6.6G bases, 485.6Mb
Run# of Spots# of BasesSizePublished
SRR2521343322,079,3136.6G485.6Mb2023-07-12

ID:
28393533

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...