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SRX20871824: GSM7548164: ATAC-seq, naive_hESC_dCAS9-KRAB+sgRNA_rep3; Homo sapiens; ATAC-seq
1 ILLUMINA (Illumina HiSeq 2500) run: 40.9M spots, 5.2G bases, 2.1Gb downloads

External Id: GSM7548164_r1
Submitted by: LVG, School of Life Science, EPFL
Study: Statistical learning quantifies transposable element-mediated cis-regulation
PRJNA859814 • SRP386902 • All experiments • All runs
show Abstracthide Abstract
KLF4 and ZNF611 ChIP-seq when overexpressed in primed or in naive respectively Overall design: ChIP-seq and ATAC-seq in Naive Human embryonic stem cells
Sample: ATAC-seq, naive_hESC_dCAS9-KRAB+sgRNA_rep3
SAMN36278193 • SRS18151543 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7548164
Instrument: Illumina HiSeq 2500
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: ATAC-seq was performed as in (Buenrostro et al., 2013) on primed WIRB3 and WIBR3dPE; naïve WIBR3 and WIBR3dPE in 4iLA and KN/2iL media respectively; and in WIBR3dPE in KN/2iL media upon dCAS9-KRAB overexpression containing or not a guide RNA targeting SVA/LTR5Hs Library were made using Nextera DNA Library Prep Kit (Illumina #FC-121-1030)
Runs: 1 run, 40.9M spots, 5.2G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR2511997540,867,5365.2G2.1Gb2023-10-03

ID:
28304147

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