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SRX20836950: GSM7520107: Emu-EF 2020-02 F12 P5 [C21]; Dromaius novaehollandiae; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 19.6M spots, 1.5G bases, 625.1Mb downloads

External Id: GSM7520107_r1
Submitted by: Extreme Biology, Institute of Fundamental Medicine and Biology, Kazan Federal University
Study: Dosage compensation of Z sex chromosome genes in avian fibroblast cells
show Abstracthide Abstract
Sex in birds is genetically determined, molecular mechanism of which is not well-understood. Their Z sex chromosome (chrZ) lacks whole chromosome inactivation as known for mammalian chrX. To investigate the extent of chrZ dosage compensation and its role in somatic cell's sex specification, we used a highly-quantitative method and analyzed transcriptional activities of male and female fibroblasts from seven birds. Our data indicate for the first time that ¾ of chrZ genes are strictly compensated, similar to that observed in chrX. We also describe non-compensated chrZ genes and identify Ribosomal Protein S6 (RPS6) as a candidate for universal, sex-dimorphic genes in birds. Overall design: Embryonic fibroblast cultures for seven bird species (chicken, quail, turkey, peacock, duck, zebra finch, and emu) obtained from males and females. At least two replicates.
Sample: Emu-EF 2020-02 F12 P5 [C21]
SAMN36094278 • SRS18114056 • All experiments • All runs
Library:
Name: GSM7520107
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: CAGE
Layout: SINGLE
Construction protocol: Total RNA was prepared using commercial reagents (TRIzol, Invitrogen) from each sample of avian embryonic fibroblast cells at the fifth passage (P5). 5ug of RNA from each fibroblast sample was used for nAnTi-CAGE and polyA RNAseq libraries preparation and subsequent sequencing using the Illumina HiSeq2500 platform (K. K. DNAForm, Yokohama, Japan)
Runs: 1 run, 19.6M spots, 1.5G bases, 625.1Mb
Run# of Spots# of BasesSizePublished
SRR2508349819,599,8161.5G625.1Mb2023-08-30

ID:
28268437

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