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SRX20808327: GSM7509457: vastus lateralis muscle,FAST,YE,trained,2,male,POST; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 54.8M spots, 4.1G bases, 1.9Gb downloads

External Id: GSM7509457_r1
Submitted by: Icahn school of medicine at Mount Sinai
Study: Effects of lifelong exercise and age on transcriptome dynamics in MHC I and MHC IIa muscle fibers at baseline and in response to resistance exercise
show Abstracthide Abstract
RNA-Seq was used for the first time to investigate the effects of resistance exercise on transcriptome dynamics in slow myosin heavy chain (MHC) I and fast MHC IIa muscle fibers among 3 groups of men. Vastus lateralis muscle biopsies were obtained before and 4 hours after resistance exercise. Overall design: A total of 25 males were included in this investigation. The participants included 8 lifelong exercisers (74±1y), 9 old healthy non-exercisers (75±1y), and 8 young exercisers (25±1y). Vastus lateralis biopsies were obtained in conjunction with a resistance exercise bout (bilateral knee extensions with 3x10 reps at 70% of 1-RM) and included a basal biopsy and another biopsy 4 hours after the exercise session. From each biopsy sample, individual muscle fibers were isolated. After myosin isoform identification of isolated fibers via SDS-PAGE, RNA extraction of MHC I and MHC IIa muscle fibers was performed. Thus, each resulting sample contained total RNA from either MHC I or MHC IIa muscle fibers. A total of 100 samples were analyzed using RNA-Seq. The study design allowed us to examine the acute effects of resistance exercise on transcriptome dynamics in MHC I and MHC IIa muscle fibers with age and exercise.
Sample: vastus lateralis muscle,FAST,YE,trained,2,male,POST
SAMN36026550 • SRS18091836 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7509457
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: TriZol extraction (TRI Reagent, Molecular Research Center, Cincinnati, OH) The SMARTer® Ultra® Low Input RNA kit (Takara, Mountain View, CA) was used to generate cDNA from 9 ng of total RNA. Using the ThruPLEX® DNA-seq kit (Takara), 1-2 ng of double-stranded cDNA was end-repaired and A-tailed to prepare for adaptor ligation. Indexed adaptors were ligated to sample DNA, and the adaptor-ligated DNA library quality was assessed by measuring nanomolar concentration and the fragment size in base pairs. Sequencing was performed on the NextSeq 500 unit (Illumina, San Diego, CA)
Runs: 1 run, 54.8M spots, 4.1G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR2505398454,843,6934.1G1.9Gb2024-01-08

ID:
28239649

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