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SRX20761946: GSM7507052: LO3_LN_RHIZO_LEAF_2; Zea mays; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 37.5M spots, 9.9G bases, 3Gb downloads

External Id: GSM7507052_r1
Submitted by: IPS2, INRA - CNRS - UPSUD
Study: responses of maize to the arbuscular fungus rhizophagus irregularis mitigate n deficiency stress-Physiological and molecular responses of maize to the arbuscular mycorrhizla fungus 5AMF) Rhizophagus irregularis mitigate nitrogen deficiency stress.
show Abstracthide Abstract
ngs2021_19_rhizophagus-responses of maize to the arbuscular fungus rhizophagus irregularis mitigate n deficiency stress-What is the impact of Rhizophagus irregularis on maize transcriptome under different N nutrition conditions, what is the impact of N on R. irregularis transcriptome in maize roots.-After 4 days of germination, maize seeds were sown in pots filled with sterile mix 1:1 clay beads:unfertilized peat. Inoculation performed in 3 times with Rhizohphagus irregularis spores purchased at Agronutrition. First inoculation perfomed with 500 spores/plant at sowing. Two other incoulations performed the following week and 2 weeks later with 100 spore per plant each. Overall design: 48 samples with 3 biological replicats. fungal gene expression in roots,dose response,genotype comparison
Sample: LO3_LN_RHIZO_LEAF_2
SAMN35879772 • SRS18050240 • All experiments • All runs
Organism: Zea mays
Library:
Name: GSM7507052
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: LO3_LN_RHIZO_LEAF_2(5ug) rna_selection:selection polyA, paired-end, stranded:yes, Protocol:PT_Illumina_Stranded_mRNA_Ligation_Prep_Demi-volume_input250ng_B_17-11-2021.docx
Runs: 1 run, 37.5M spots, 9.9G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR2500655037,474,5139.9G3Gb2023-12-13

ID:
28192675

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