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SRX20686989: GSM7493295: sgEmpty_1; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 18.1M spots, 1.4G bases, 526.1Mb downloads

Submitted by: NCBI (GEO)
Study: SETD1A function is mediated through interaction with mitotic regulators BuGZ/BUB3 in leukemia [RNA-seq]
show Abstracthide Abstract
The H3K4 methyltransferase SETD1A plays a crucial role in leukemia cell survival through its non-catalytic FLOS domain mediated recruitment of cyclin K and regulation of DNA damage response genes. In this study, we identify a functional nuclear localization signal and interaction partners for the FLOS domain. Our proteomics analysis against FLOS domain-binding partners reveals that the SETD1A FLOS domain binds mitosis-associated proteins BuGZ/BUB3. Targeted inhibition of both cyclin K and BuGZ/BUB3 binding motifs on SETD1A shows synergistic anti-leukemic effects. BuGZ/BUB3 localize to SETD1A-positive promoter-TSS regions and SETD1A-negative H3K4me1-positive enhancer regions adjacent to SETD1A-target genes. The GLEBS motif and intrinsically disordered region of BuGZ are required for both SETD1A binding and the leukemia cell proliferation. Despite the role of BuGZ/BUB3 at mitotic phase, the cell-cycle specific SETD1A restoration study indicates the roles of SETD1A at G1/S phase of cell cycle. Discovery of this complex indicates the indispensable role of the SETD1A-BuGZ axis in cancer. Overall design: 1) Examination of SETD1A, BuGZ and BUB3 targets in human MOLM-13 leukemia cell line, 2) Examination of BuGZ and SETD1A knockdown in human MOLM-13 leukemia cell line. 3) Examination of SETD1A knockout and rescue in mouse MLL-AF9 leukemia cell line.
Sample: sgEmpty_1
SAMN35743228 • SRS17980714 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was collected using RNeasy (Invitrogen, Carlsbad, CA) Libraries for RNA-seq were prepared using the TruSeq Stranded mRNA Sample Prep Kit (Illumina).
Experiment attributes:
GEO Accession: GSM7493295
Links:
Runs: 1 run, 18.1M spots, 1.4G bases, 526.1Mb
Run# of Spots# of BasesSizePublished
SRR2492784818,076,3741.4G526.1Mb2023-07-30

ID:
28116661

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