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SRX20662163: GSM7474036: 22Rv1 THZ531 treated replica 2; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 77.9M spots, 23.4G bases, 7.6Gb downloads

External Id: GSM7474036_r1
Submitted by: Paris Biotech Santé, GenoSplice technology
Study: Splicing targeting approaches highlight actionable vulnerabilities in advanced prostate cancer [22Rv1]
show Abstracthide Abstract
To investigate if pharmacological inhibition of splicing could uncover novel actionable vulnerabilities in CRPC, we profiled the genome-wide transcriptional changes elicited in 22Rv1 cells by treatment with three drugs that inhibit the splicing through different molecular targets: i. Pladienolide B, that impairs the activity of SF3B1; ii. Indisulam that promote degradation of the splicing factor RBM39; iii. THZ531 inhibits the cyclin dependent kinases (CDK) 12 and 13. Overall design: Poly-A plus RNA-sequencing of 22Rv1 cells treated with Indisulam (3.3µM, 12hrs), or Pladienolide B (10nM, 6hrs) or THZ531 (200nM, 6hrs) or DMSO as control.
Sample: 22Rv1 THZ531 treated replica 2
SAMN35716439 • SRS17958850 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7474036
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: total RNA was extracted and DNAse treated using the RNEasy mini kit (Qiagen) according to manufacturer's instruction Universal Plus mRNA-Seq kit (Tecan Genomics, Redwood City, CA) has been used for library preparation following the manufacturer's instructions (library type: fr-secondstrand).
Runs: 1 run, 77.9M spots, 23.4G bases, 7.6Gb
Run# of Spots# of BasesSizePublished
SRR2490008077,922,97023.4G7.6Gb2024-03-06

ID:
28091536

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