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SRX2053543: GSM2292726: Dog_MLHD_Bis_PCR_30; Canis lupus familiaris; OTHER
2 ILLUMINA (Illumina MiSeq) runs: 293,197 spots, 88.5M bases, 49Mb downloads

Submitted by: NCBI (GEO)
Study: The rate of ageing-associated DNA methylation dynamics is a molecular readout of lifespan variation amongst mammalian species [Bis-PCR: dog]
show Abstracthide Abstract
We used buccal samples from two different dog breeds with well established differences in average lifespan to perform genome-scale identification of ageing-associated differentially methylated positions (aDMPs) in a total of 48 different dogs. A significant proportion of aDMPs that gained methylation with age replicated in an independent cohort. Furthermore, we also show that human aDMPs show similar ageing-associated dynamics at the homologous genomic regions in the dog. The replicated aDMPs show a faster rate of change with age in the shorter lived dog species. Strikingly, these aDMPs also show a faster rate of change with age in dogs overall compared with humans. Overall design: Bis-PCR profiling of dogs of various age from two different breeds.
Sample: Dog_MLHD_Bis_PCR_30
SAMN05660034 • SRS1645623 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Targeted bisulfite PCR-based analysis was performed using the 48.48 layout on the Fluidigm C1 system (Fluidigm, USA), coupled with Illumina MiSeq sequencing. Bisulfite PCR primers were designed using Primer3 (PMID:17485472), DNA was bisfulite converted (EpiTect, Qiagen) prior to amplification. Amplicons from a single sample were pooled and individually indexed to create a multiplex library prior to sequencing on an Illumina MiSeq instrument using v3 chemistry.
Experiment attributes:
GEO Accession: GSM2292726
Links:
Runs: 2 runs, 293,197 spots, 88.5M bases, 49Mb
Run# of Spots# of BasesSizePublished
SRR406472597,99829.6M15.9Mb2018-01-23
SRR4064727195,19959M33.1Mb2018-01-23

ID:
3028144

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