U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX20519213: GSM7429038: Female_WT_RNA-seq_Rep3; Anopheles gambiae; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 13.8M spots, 2G bases, 739.4Mb downloads

External Id: GSM7429038_r1
Submitted by: Bioinformatics Core Facility, Institute of Molecular Biology (IMB)
Study: The sex-specific factor SOA establishes X chromosome dosage compensation in Anopheles mosquitos [SOAR-RNA-seq]
show Abstracthide Abstract
The Anopheles mosquito is one of thousands of species in which sex differences play a central role in their biology, as only females need a blood meal in order to produce eggs. Sex differentiation is regulated by sex chromosomes, but their presence creates a dosage imbalance between males (XY) and females (XX). Dosage compensation (DC) can re-equilibrate the expression of sex-chromosomal genes, but because DC mechanisms have only been fully characterized in a few model organisms, key questions about its evolutionary diversity and functional necessity remain unresolved. Here we report the discovery of a previously uncharacterized gene (SOA) as a master regulator of DC in the malaria mosquito Anopheles gambiae. Sex-specific alternative splicing prevents functional SOA protein expression in females. The male isoform encodes a DNA-binding protein that binds the promoters of active X chromosomal genes. Expressing male SOA is sufficient to induce DC in female cells. Male mosquitoes lacking SOA or female mosquitos ectopically expressing the male isoform exhibit X chromosome misregulation, which is compatible with viability but causes developmental delay. Thus, our molecular analysis of the first DC master regulator in a non-model organism elucidates the evolutionary steps leading to the establishment of a chromosome-specific fine-tuning mechanism. Overall design: Comparative gene expression profiling analysis of RNA-seq data for female pupae of wild-type and SOA-R knock-in genotype
Sample: Female_WT_RNA-seq_Rep3
SAMN35369588 • SRS17829162 • All experiments • All runs
Library:
Name: GSM7429038
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using Trizol (Fisher Scientific, Cat. No.15-596-026) and the Direct-zol RNA MicroPrep Kit (Zymo Research, Cat. No. R2062). NGS library prep was performed with Illumina's Stranded mRNA Prep Ligation Kit following Stranded mRNA Prep Ligation ReferenceGuide (June 2020) (Document # 1000000124518 v00).
Runs: 1 run, 13.8M spots, 2G bases, 739.4Mb
Run# of Spots# of BasesSizePublished
SRR2474192713,836,7632G739.4Mb2023-07-25

ID:
27942896

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...