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SRX20474530: GSM7412550: RNA-Seqoftobacco:Stalk [Va116_Sa_1]; Nicotiana tabacum; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 36.2M spots, 10.9G bases, 3.3Gb downloads

External Id: GSM7412550_r1
Submitted by: Tobacco College, Key Laboratory for Tobacco Quality Research Guizhou Province, Guizhou University
Study: Transcriptome analysis of different tissues in different materials
show Abstracthide Abstract
We used two hybrid combinations and their 4 parents as materials. One week after topping the tobacco plant, samples were taken, including three tissues: root, stalk, and leaf. The RNA of these samples was extracted, and transcriptome sequencing analysis was carried out to explore the transcriptional profile differences between hybrids and their parents, and to analyze the gene differential expression between different tissues. Overall design: Fifty-four samples were analyzed, including six plant materials,three plant tissues, each with three replicates.
Sample: RNA-Seqoftobacco:Stalk [Va116_Sa_1]
SAMN35325767 • SRS17786733 • All experiments • All runs
Library:
Name: GSM7412550
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from the tissue using TRIzol® Reagent (Plant RNA Purification Reagent for plant tissue) according the manufacturer's instructions (Invitrogen) and genomic DNA was removed using DNase I (TaKara). Then RNA quality was determined by 2100 Bioanalyser (Agilent) andquantified using the ND-2000 (NanoDrop Technologies). Only high-quality RNA sample(OD260/280=1.8~2.2, OD260/230≥2.0, RIN≥6.5, 28S:18S≥1.0, >1μg) was used to construct sequencing library. RNA-seq transcriptome librariy was prepared following TruSeqTM RNA sample preparation Kit from Illumina (San Diego, CA) using 1μg of total RNA. After quantified by TBS380, paired-end RNA-seq sequencing library was sequenced with the Illumina HiSeq xten/NovaSeq 6000 sequencer (2 × 150bp read length)
Runs: 1 run, 36.2M spots, 10.9G bases, 3.3Gb
Run# of Spots# of BasesSizePublished
SRR2469583836,173,82810.9G3.3Gb2023-06-09

ID:
27897912

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