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SRX20454138: GSM7398487: DMSO_H3K27AC; Rattus norvegicus; OTHER
4 ILLUMINA (NextSeq 550) runs: 10.1M spots, 1.5G bases, 602.3Mb downloads

External Id: GSM7398487_r1
Submitted by: Cincinnati Children's Hospital Medical Center
Study: Small-molecule-induced epigenetic rejuvenation overcomes myelinogenic barriers and stimulates myelin repair [Cut&Run]
show Abstracthide Abstract
Failure of oligodendrocytes to remyelinate underlies diseases such as multiple sclerosis (MS). We found that epigenetic silencing prevents oligodendrocytes from producing myelin sheaths in demyelinating MS lesions. Here, we developed a transgenic reporter system to identify a small-molecule epigenetic modulator that stimulates oligodendrocyte maturation and myelin ensheathment in vitro. This compound promoted remyelination in animal models of MS and myelination of regenerated axons and increased myelin sheath lengths in human iPSC-derived organoids. Multi-omics analyses revealed that the compound induced an enhancer/super-enhancer landscape that upregulates crucial myelinogenesis-associated pathways, including RRAS2-AKT signaling, driving actin depolymerization necessary for myelin ensheathment. Strikingly, the compound also induced phase-separated nuclear condensates of SREBP1/2, which concentrate transcriptional co-activators to drive lipid and cholesterol biosynthesis. Silencing expression of a potential target of the small molecule, HDAC3, facilitated robust myelination and remyelination. Our findings suggest that small-molecule-modulated epigenome rejuvenation relieves epigenetic silencing barriers and promotes myelin repair. Overall design: cut and run of treated rat iOLs with indicated antibody
Sample: DMSO_H3K27AC
SAMN35220431 • SRS17749429 • All experiments • All runs
Library:
Name: GSM7398487
Instrument: NextSeq 550
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Cut &Run cleaved fragments were purified by Qiagen MinElute PCR Purification Kit. Libraries were prepared for Illumina sequencing with Library Prep for CUT&RUN with NEBNext® Ultra™ II DNA Library Prep Kit for Illumina® (E7645).
Runs: 4 runs, 10.1M spots, 1.5G bases, 602.3Mb
Run# of Spots# of BasesSizePublished
SRR246745442,559,872384M152.2Mb2024-05-24
SRR246745452,465,260369.8M146.3Mb2024-05-24
SRR246745462,556,463383.5M151.9Mb2024-05-24
SRR246745472,560,017384M152Mb2024-05-24

ID:
27877293

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