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SRX20238387: GSM7304288: M1-AGDT c32_1 AG no BMP2; Homo sapiens; OTHER
3 ILLUMINA (Illumina NovaSeq 6000) runs: 268.5M spots, 59.6G bases, 18.5Gb downloads

External Id: GSM7304288_r1
Submitted by: Anatomy and Cell Biology, Kyoto University, Graduate school of medicine
Study: In vitro reconstitution of epigenetic reprogramming in the human germ line [EM-Seq]
show Abstracthide Abstract
Epigenetic reprogramming resets parental epigenetic memories and differentiates primordial germ cells (PGCs) into mitotic pro-spermatogonia or oogonia, ensuring sexually dimorphic germ-cell development for totipotency. However, the mechanism of epigenetic reprogramming in humans remains unknown. Here, we establish a robust strategy for inducing epigenetic reprogramming and differentiation of pluripotent stem cell (PSC)-derived human PGC-like cells (hPGCLCs) into mitotic pro-spermatogonia or oogonia, coupled with their extensive amplification (~>10(10)-fold). Strikingly, bone morphogenetic protein (BMP) signaling is the key driver of these processes. Mechanistically, BMP signaling attenuates the mitogen-activated protein kinase/extracellular-regulated kinase (MAPK/ERK) pathway and both de novo and maintenance DNA methyltransferase (DNMT) activities, promoting replication-coupled, passive DNA demethylation. On the other hand, tens-eleven translocation (TET) 1, an active DNA demethylase abundant in human germ cells, plays a dual role in hPGCLC differentiation: safeguarding hPGCLCs against differentiation into amnion-like cells by repressing key genes with bivalent promoters, and facilitating coordinated activation of genes vital for spermatogenesis and oogenesis by demethylating their promoters. Our study uncovers the principle of epigenetic reprogramming in humans, making a fundamental advance in human biology, and through the generation of abundant mitotic pro-spermatogonia and oogonia-like cells, represents a milestone for human in vitro gametogenesis (IVG) research and its potential translation into reproductive medicine. Overall design: Whole genome EMseq analysis of human PGCLCs expanded with BMP signaling.
Sample: M1-AGDT c32_1 AG no BMP2
SAMN34721819 • SRS17572267 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7304288
Instrument: Illumina NovaSeq 6000
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Gemomic DNA extraction was integrated in "library construction protocol" process. EM-seq libraries were generated as described previously (Gyobu-Motani, 2023). EM-seq, (Vaisvila, 2021)
Runs: 3 runs, 268.5M spots, 59.6G bases, 18.5Gb
Run# of Spots# of BasesSizePublished
SRR2445140339,792,7108.8G2.8Gb2024-04-25
SRR24451404112,726,07025G7.8Gb2024-04-25
SRR24451405116,013,39025.8G8Gb2024-04-25

ID:
27658753

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