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SRX19757107: GSM7113080: F39_North Carolina_2019_S29; Cucumis melo; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 23M spots, 6.9G bases, 2Gb downloads

External Id: GSM7113080_r1
Submitted by: Department of Horticultural Sciences, Texas A&M University
Study: RNA-seq data of melon fruits produced in different locations
show Abstracthide Abstract
cDNA libraries of Melon fruits produced in different locations in the USA Overall design: RNA sequencing using fruits harvested at 45 days after flowering (cultivar: F39 & TTDV in 2018 and F39, TTDV, PRIMO, OC164, CRUISER, HD-150, HD-252, infinite Gold, TH-5 and TH-6 in 2019).
Sample: F39_North Carolina_2019_S29
SAMN33871295 • SRS17122298 • All experiments • All runs
Organism: Cucumis melo
Library:
Name: GSM7113080
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Approximately 0.25 g of the powdered, frozen tissues were mixed with 1 ml of Trizol reagent (ThermoFisher) and incubate for 5 minutes. The solution was mixed with 0.5 ml of chloroform and centrifuged at 12,000g for 10 minutes after incubation for 5 minutes. The aqueous phase was mixed with 350 µl of ethanol and loaded to an EconoSpin column (Epoch Life Science), and centrifuged at 8,000 g for 40 seconds. The column was washed twice with 450 µl of 3M sodium acetate and with 320 µl of 70% ethanol. RNA was eluted with 30 µl of RNase-free water. Subsequently, RNA samples were treated with DNase and cleaned up with phenol-chloroform extraction and ethanol precipitation. cDNA libraries were synthesized using Universal Plus mRNA-seq with NuQuant Kit (NuGen) according to the manufacturer's protocol
Runs: 1 run, 23M spots, 6.9G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR2394807122,952,4576.9G2Gb2024-03-01

ID:
27082617

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