U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX19757102: GSM7113075: F39_Georgia_2019_S24; Cucumis melo; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 28.5M spots, 8.6G bases, 2.5Gb downloads

External Id: GSM7113075_r1
Submitted by: Department of Horticultural Sciences, Texas A&M University
Study: RNA-seq data of melon fruits produced in different locations
show Abstracthide Abstract
cDNA libraries of Melon fruits produced in different locations in the USA Overall design: RNA sequencing using fruits harvested at 45 days after flowering (cultivar: F39 & TTDV in 2018 and F39, TTDV, PRIMO, OC164, CRUISER, HD-150, HD-252, infinite Gold, TH-5 and TH-6 in 2019).
Sample: F39_Georgia_2019_S24
SAMN33871300 • SRS17122293 • All experiments • All runs
Organism: Cucumis melo
Library:
Name: GSM7113075
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Approximately 0.25 g of the powdered, frozen tissues were mixed with 1 ml of Trizol reagent (ThermoFisher) and incubate for 5 minutes. The solution was mixed with 0.5 ml of chloroform and centrifuged at 12,000g for 10 minutes after incubation for 5 minutes. The aqueous phase was mixed with 350 µl of ethanol and loaded to an EconoSpin column (Epoch Life Science), and centrifuged at 8,000 g for 40 seconds. The column was washed twice with 450 µl of 3M sodium acetate and with 320 µl of 70% ethanol. RNA was eluted with 30 µl of RNase-free water. Subsequently, RNA samples were treated with DNase and cleaned up with phenol-chloroform extraction and ethanol precipitation. cDNA libraries were synthesized using Universal Plus mRNA-seq with NuQuant Kit (NuGen) according to the manufacturer's protocol
Runs: 1 run, 28.5M spots, 8.6G bases, 2.5Gb
Run# of Spots# of BasesSizePublished
SRR2394807628,543,3528.6G2.5Gb2024-03-01

ID:
27082612

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...