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SRX19719244: GSM7104588: Mouse Alveolar Macrophage, 2 months post vaccinated with dNS1-Vector 1; Mus musculus; ATAC-seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 18.2M spots, 5.5G bases, 1.7Gb downloads

External Id: GSM7104588_r1
Submitted by: Xiamen University
Study: Intranasal delivery of NS1-deleted influenza virus vectored COVID-19 vaccine restrains the SARS-CoV-2 inflammatory response (Mouse AMs ATAC-seq Data)
show Abstracthide Abstract
The emergence of SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus-2) variants and “anatomical escape” characteristics threaten the effectiveness of current coronavirus disease (COVID-19) vaccines. There is an urgent need to understand the immunological mechanism of broad-spectrum respiratory tract protection to guide broader vaccines development. In this study, we investigated immune responses induced by an NS1-deleted influenza virus vectored intranasal COVID-19 vaccine (dNS1-RBD) which provides broad-spectrum protection against SARS-CoV-2 variants. Intranasal delivery of dNS1-RBD induced innate immunity, trained immunity and tissue-resident memory T cells covering the upper and lower respiratory tract. It restrained the inflammatory response by suppressing early phase viral load post SARS-CoV-2 challenge and attenuating pro-inflammatory cytokine (IL-6, IL-1B, and IFN-?) levels, thereby reducing excess immune-induced tissue injury compared with the control group. By inducing local cellular immunity and trained immunity, intranasal delivery of NS1-deleted influenza virus vectored vaccine represents a broad-spectrum COVID-19 vaccine strategy to reduce disease burden. To investigate the trainned-immunity of alveolar macrophage generated by dNS1-RBD vaccine in C57BL/6 mouse, we vaccinated C57BL/6 mice with dNS1-RBD/dNS1-Vector/PBS and collect the alveolar macrophage samples to sequence for the ATAC-seq data 2 months post vaccinated. Then performed the differential peak and igv track visualization with this dataset. Overall design: Differential peak and igv track visualization and enrichment analysis analysis of alveolar macrophage ATAC-seq data in dNS1-RBD/dNS1-Vector/PBS vaccinated group at 2 months post immunization.
Sample: Mouse Alveolar Macrophage, 2 months post vaccinated with dNS1-Vector 1
SAMN33818996 • SRS17086379 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7104588
Instrument: Illumina NovaSeq 6000
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Cells were lysed with lysis buffer (10 mM Tris-HCl pH 7.4, 10 mM MgCl2, and 0.1% IGEPAL CA-630). Libraries were prepared using the TruePrep DNA library prep kit V2 for Illumina (Vazyme) according to the manufacturer's instructions. Libraries were cleaned up with AMPure XP beads (Beckman coulter) at a ratio of 0.7 and the quality was assessed using the 2100 Bioanalyzer (Agilent Technologies). Libraries were sequenced with 150 paired ends using a NovaSeq 6000 instrument (Illumina) for an average of 20 million reads per sample.
Runs: 1 run, 18.2M spots, 5.5G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR2390762518,204,3955.5G1.7Gb2023-05-28

ID:
27029750

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