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SRX1958690: GSM2238613: Control A (CSES7); Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 38.4M spots, 3.2G bases, 1.5Gb downloads

Submitted by: NCBI (GEO)
Study: Modeling Trilateral Retinoblastoma using Human Embryonic Stem Cells
show Abstracthide Abstract
Human embryonic stem cells (hESCs) provide a platform for understanding mechanisms underlying diseases and finding ways to treat them. Trilateral retinoblastoma (TRb) is a condition in which retinoblastoma, the most common congenital intraocular malignancy, is associated with an intracranial neural tumor. This mostly fatal disease is caused by biallelic inactivation of the retinoblastoma-1 (RB1) gene, transcribing pRB. Using CRISPR-Cas9 we generated RB1-null hESCs, an embryonic lethal condition. These cells display distinct gene expression patterns with alterations in pRB targets, and mitochondrial phenotypes similar to those of poorly differentiated retinoblastomas. RB1–/– hESC produce extremely large teratomas, with neural expansions similar to those of TRb tumors. Analysis of these tumors revealed a potentially novel role of pRB in ectoderm differentiation, acting through ZEB1. Lastly, RB1–/– cells are significantly sensitive to carboplatin, a chemotherapy used to treat TRb, suggesting our model can be used to screen novel treatments for the disease. Overall design: Analysis of RB1–/– human embryonic cell lines and teratomas initiated from them
Sample: Control A (CSES7)
SAMN05413959 • SRS1569106 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was isolated using NucleoSpin RNA Plus kit (Macherey-Nageland). For RNA sequencing analysis, poly(A) pull-down was used to enrich mRNAs from total RNA samples (200 ng–1 µg per sample, RIN > 9) Libraries were prepared using the TruSeq RNA Library Prep Kit v2 (Illumina)
Experiment attributes:
GEO Accession: GSM2238613
Links:
Runs: 1 run, 38.4M spots, 3.2G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR392903038,449,9043.2G1.5Gb2017-04-13

ID:
2819541

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