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SRX19585129: GSM7084204: S38W; Papio anubis; RNA-Seq
1 ILLUMINA (NextSeq 2000) run: 10.5M spots, 1.1G bases, 334.4Mb downloads

External Id: GSM7084204_r1
Submitted by: MC103, GHD, OMRF
Study: The Isolation and In vitro Differentiation of Primary Fetal Baboon Tracheal Epithelial Cells for the Study of SARS-CoV-2 Host-Virus Interactions
show Abstracthide Abstract
The mucociliary airway epithelium lines the human airways and is the primary site of host-environmental interactions in the lung. Following virus infection, airway epithelial cells initiate an innate immune response to suppress virus replication. Therefore, defining the virus-host interactions of the mucociliary airway epithelium is critical for understanding the mechanisms that regulate virus infection, including Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Non-human primates (NHP) are closely related to humans; and provide a model to study human disease. However, ethical considerations and high costs can restrict the use of in vivo NHP models. Therefore, there is a need to develop in vitro NHP models of human respiratory virus infection that would allow for rapidly characterizing virus tropism and suitability of specific NHP species to model human infection. Using the olive baboon (Papio anubis), we have developed methodologies for the isolation, in vitro expansion, cryopreservation, and mucociliary differentiation of primary fetal baboon tracheal epithelial cells (FBTECs). Furthermore, we demonstrate that in vitro differentiated FBTECs are permissive to SARS-CoV-2 infection and produce a potent host innate-immune response. In summary, we have developed an in vitro NHP model that provides a platform for the study of SARS-CoV-2 infection and other human respiratory viruses. Overall design: mRNA profiling of primary fetal baboon tracheal epithelial cells (FBTECs) differentiated on air-liquid interface (ALI) culture for 28 days.
Sample: S38W
SAMN33611748 • SRS16968008 • All experiments • All runs
Organism: Papio anubis
Library:
Name: GSM7084204
Instrument: NextSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted via direct lysis of cells in the ALI well using the PureLinkTM RNA mini kit (Cat# 12183018A, Thermo Scientific, Waltham, MA, USA) and included DNase treatment (Cat# 12185-010, Thermo Scientific) on the column to remove contaminating genomic DNA. RNA concentrations were measured with a NanoPhotometer® N60 (Implen, Westlake Village, CA, USA) RNA-sequencing was performed on a NextSeq 2000 P2 Flowcell, (Illumina, San Diego, CA, USA) following library preparation using the QuantSeq 3′ mRNA-Seq Library Prep Kit FWD for Illumina (Lexogen, Vienna, Austria). The library preparation and sequencing were performed by the Genomics Core at the University of Oklahoma Health Sciences Center (OUHSC)
Runs: 1 run, 10.5M spots, 1.1G bases, 334.4Mb
Run# of Spots# of BasesSizePublished
SRR2372446910,508,8321.1G334.4Mb2023-03-14

ID:
26879049

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