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SRX19581785: GSM7085187: Vero76 cells, R. rickettsii st. Iowa, 24hpi, Rep1; Chlorocebus aethiops; RNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 126.8M spots, 19.3G bases, 5.9Gb downloads

External Id: GSM7085187_r1
Submitted by: NIAID, NIH
Study: Identification of an outer membrane protease of Rickettsia rickettsii responsible for maturation of surface exposed autotransporters
show Abstracthide Abstract
Members of the spotted fever group rickettsia express four large, surface-exposed autotransporters, at least one of which is a known virulence determinant. Autotransporter translocation to the bacterial outer surface, also known as type V secretion, involves formation of a b-barrel autotransporter domain in the periplasm that inserts into the outer membrane to form a pore through which the N-terminal passenger domain is passed and exposed on the outer surface. Two major surface antigens of Rickettsia rickettsii, are known to be exposed and the passenger domain cleaved from the autotransporter domain. A highly passaged strain of R. rickettsii, Iowa, fails to cleave these autotransporters and is avirulent. We have identified a putative peptidase, truncated in the Iowa strain, that when reconstituted into Iowa restores appropriate processing of the autotransporters as well as restoring a modest degree of virulence. Overall design: Comparative gene expression profiling analysis of Rickettsia rickettsii infected Vero cells at 4, 24, 48 hours post infection.
Sample: Vero76 cells, R. rickettsii st. Iowa, 24hpi, Rep1
SAMN33614064 • SRS16964683 • All experiments • All runs
Library:
Name: GSM7085187
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA containing aqueous phase was extracted using Qiagen AllPrep DNA/RNA 96-well system (Valencia, CA). The RNA yield was determined by spectrophotometry at 260 nm and 280nm and the integrity was assessed using the Agilent 2100 Bioanalyzer using RNA 6000 Pico kit (Agilent Technologies, Santa Clara, Ca). The average RNA Integrity Number (RIN) was 9.2. Ribo-Zero Epidemiology kits (Illumina, Inc, San Deigo, CA) were used to deplete the samples of ribosomal RNAs prior to library preparation with the TruSeq Total RNA-Seq Library Prep Kit (Illumina), starting at the Elute-Frag-Prime step without further modification. Final libraries were assessed on a BioAnalyzer DNA1000 chip (Agilent Technologies, Santa Clara, CA) and quantified using the Kapa Quantification Kit for Illumina MiSeq (v3 chemistry )Sequencing (Roche, Basel, Switzerland).
Runs: 1 run, 126.8M spots, 19.3G bases, 5.9Gb
Run# of Spots# of BasesSizePublished
SRR23720791126,806,50619.3G5.9Gb2023-07-06

ID:
26874985

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