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SRX19471812: GSM7057393: MCWR_2019_000373; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 13.5M spots, 3.8G bases, 1.1Gb downloads

External Id: GSM7057393_r1
Submitted by: Feinberg School of Medicine, Northwestern University
Study: SOCS1 regulates a subset of NF?B-target genes through direct chromatin binding and defines macrophage functional phenotypes (RNA-Seq).
show Abstracthide Abstract
Suppressor of cytokine signaling-1 (SOCS1) exerts control over inflammation by targeting p65 NF?B for degradation in addition to its canonical role regulating cytokine signaling. We report here that SOCS1 does not operate on all p65 targets equally, instead localizing to a select subset of pro-inflammatory genes. Promoter-specific interactions of SOCS1 and p65 determine the subset of genes activated by NF?B during systemic inflammation, with profound consequences for cytokine responses, immune cell mobilization, and tissue injury. Nitric oxide synthase-1 (NOS1)-derived NO is required and sufficient for displacement of SOCS1 from chromatin, permitting full transcriptional activation of these genes. Single cell transcriptomic analysis of NOS1-deficient animals led to the detection of a regulatory macrophage subset, which exerts potent suppression on inflammatory cytokine responses and tissue remodeling. These results provide the first example of a redox-sensitive, gene-specific mechanism for converting macrophages from cells that regulate inflammation to cells licensed to promote aggressive and potentially injurious inflammation. Overall design: Comparative gene expression profiling analysis of RNA-seq data for wild type (C65BL6) or NOS1 KO BMDM after treatment with LPS.
Sample: MCWR_2019_000373
SAMN33415471 • SRS16863680 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7057393
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was isolated using RNeasy Mini Kit (QIAGEN, # 74106) with additional DNase treatment using RNase-free DNase Set (QIAGEN, # 1023460). Sequencing libraries were generated using Illumina Novaseq platform.
Runs: 1 run, 13.5M spots, 3.8G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR2358645413,535,0913.8G1.1Gb2023-03-01

ID:
26750386

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