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SRX19323705: GSM7036342: EE_Pol_II_2; Drosophila melanogaster; OTHER
1 ILLUMINA (Illumina HiSeq 2500) run: 36M spots, 1.8G bases, 445.7Mb downloads

External Id: GSM7036342_r1
Submitted by: Institut Curie
Study: Chromatin state transitions in the Drosophila intestinal lineage reveal principles of cell type specification [DamID]
show Abstracthide Abstract
To investigate the chromatin state into an adult stem cell lineage, we generate cell-type specific chromatin state maps in the adult Drosophila intestine and identify principal chromatin state transitions during lineage determination. we profiled the binding sites of five chromatin-associated proteins from which the previously described five major types of chromatin. Overall design: Comparative chromatin accessibility (ATAC-seq) as well as gene expression (RNA-seq) in Drosophila ISC/EB in control and H1 RNAi conditions
Sample: EE_Pol_II_2
SAMN33228594 • SRS16721687 • All experiments • All runs
Library:
Name: GSM7036342
Instrument: Illumina HiSeq 2500
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: SINGLE
Construction protocol: For each replicate, DNA was extracted from 60 dissected guts via Qiagen QIAmp DNA Micro Kit following manufacturers' instructions, Extracted DNA was digested with DpnI, ligated with DamID adaptors, digested with DpnII before PCR amplification. DNA was sonicated to 300bp, adaptors were removed with AlwI and end-repaired and A-tailed. Sequencing adaptors were ligated to the fragments before PCR amplification.
Runs: 1 run, 36M spots, 1.8G bases, 445.7Mb
Run# of Spots# of BasesSizePublished
SRR2338542735,997,4301.8G445.7Mb2023-10-26

ID:
26572241

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