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SRX19194106: GSM6997563: 2_Ctrl; Xenopus laevis; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 79.4M spots, 6G bases, 2.1Gb downloads

External Id: GSM6997563_r1
Submitted by: UMR7221, AVIV, Museum national d'Histoire naturelle
Study: A mixture of chemicals found in human amniotic fluid disrupts brain gene expression and behavior in Xenopus laevis
show Abstracthide Abstract
We hypothesized that embryonic exposure to a mixture of chemicals (containing phenols, phthalates, pesticides, heavy metals, and perfluorinated, polychlorinated, and polybrominated compounds) identified as commonly found in the human amniotic fluid (as calculated in Fini et al., ) could lead to altered brain development. We assessed its effect on TH signaling and neuro-development in an amphibian model (Xenopus laevis) highly sensitive to thyroid disruption. Fertilized eggs were exposed for eight days to either TH (thyroxine, T4 10 nM) or the amniotic mixture (at the actual concentration) until reaching stage NF47, where we analyzed gene expres-sion in the brains of exposed tadpoles using both RT-qPCR and RNA sequencing. Overall design: Comparative gene expression profiling analysis of RNA-seq data for brains of exposed tapoles to TH or the amniotic mixture compare to the control.
Sample: 2_Ctrl
SAMN32934461 • SRS16604484 • All experiments • All runs
Organism: Xenopus laevis
Library:
Name: GSM6997563
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was harvested using RNAqueous-microkit from Thermofisher. Libraries are made from 50 ng of total RNA based on Qubit assays. The transcriptome libraries were prepared from total RNA using Illumina TruSeq Stranded mRNA Sample Preparation kits (Illumina Inc., USA).
Runs: 1 run, 79.4M spots, 6G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR2324859279,385,7626G2.1Gb2023-01-27

ID:
26393729

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