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SRX18978925: GSM6923188: buccal pouch, no treatment (control), rep 3; Cricetulus griseus; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 13M spots, 648.5M bases, 403.9Mb downloads

External Id: GSM6923188_r1
Submitted by: Shanxi Key Laboratory of Experimental Animal Science and Human Disease Animal Model, Laboratory Animal Center, Shanxi Medical University
Study: Screening and identification of miR-181a-5p in oral squamous cell carcinoma and functional verification in vivo and in vitro
show Abstracthide Abstract
Background: Oral squamous cell carcinoma (OSCC) is a common malignant tumor associated with poor prognosis. MicroRNAs (miRNAs) play crucial regulatory roles in the cancer development. However, the role of miRNAs in OSCC development and progression is not well understood. Methods: We sought to establish a dynamic Chinese hamster OSCC animal model, construct miRNA differential expression profiles of its occurrence and development, predict its targets, and perform functional analysis and validation in vitro. Results: Using expression and functional analyses, the key candidate miRNA (miR-181a-5p) was selected for further functional research, and the expression of miR-181a-5p in OSCC tissues and cell lines was detected. Subsequently, transfection technology and a nude mouse tumorigenic model were used to explore potential molecular mechanisms. miR-181a-5p was significantly downregulated in human OSCC specimens and cell lines, and decreased miR-181a-5p expression was observed in multiple stages of the Chinese hamster OSCC animal model. Moreover, upregulated miR-181a-5p significantly inhibited OSCC cell proliferation, colony formation, invasion, and migration; blocked the cell cycle; and promoted apoptosis. BCL2 was identified as a target of miR-181a-5p. BCL2 may interact with apoptosis- (BAX), invasion- and migration- (TIMP1, MMP2, and MMP9), and cell cycle-related genes (KI67, E2F1, CYCLIND1, and CDK6) to further regulate biological behavior. Tumor xenograft analysis indicated that tumor growth was significantly inhibited in the high miR-181a-5p expression group. Conclusions: Our findings indicate that miR-181a-5p can be used as a potential biomarker and provide a novel animal model for mechanistic research on oral cancer. Overall design: Comparative gene expression profiling analysis of RNA-seq data for the Chinese hamster oral cancer animal model (Use DMBA to induce oral cancer in the animal model)
Sample: buccal pouch, no treatment (control), rep 3
SAMN32641638 • SRS16400538 • All experiments • All runs
Library:
Name: GSM6923188
Instrument: Illumina HiSeq 2500
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Gradually extract total RNA from tissues according to the experimental instruction manual in Trizol kit A total of 18–30 nt RNA fragments were excised, purified from a PAGE gel, and ligated with 5' and 3' adaptors using T4RNA ligase. Reverse transcription followed by PCR was used to create cDNA based on the small RNA ligated with 3' and 5' adapters. Subsequently, the amplified cDNA constructs were purified from agarose gel, in preparationfor sequencing analysis using the Illumina HiSeq 2500 Analyzer (Illumina, CA, USA) according to the manufacturer'sinstructions
Runs: 1 run, 13M spots, 648.5M bases, 403.9Mb
Run# of Spots# of BasesSizePublished
SRR2302342012,969,637648.5M403.9Mb2023-01-10

ID:
26121238

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