U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX18827906: GSM6891181: mBD2(SKY)-PBRM1- Replicate 1; Homo sapiens; OTHER
1 ILLUMINA (Illumina NovaSeq 6000) run: 24M spots, 7.2G bases, 2.2Gb downloads

External Id: GSM6891181_r1
Submitted by: Medicinal Chemistry and Molecular Pharmacology, Purdue University
Study: PBRM1 bromodomains associate with RNA to facilitate chromatin association (CLIP-seq)
show Abstracthide Abstract
PBRM1 is a subunit of the PBAF chromatin remodeling complex, which is mutated in 40-50% of clear cell renal cell carcinoma patients. It is thought to largely function as a chromatin binding subunit of the PBAF complex, but the molecular mechanism underlying this activity is not fully known. PBRM1 contains six tandem bromodomains which are known to cooperate in binding of nucleosomes acetylated at histone H3 lysine 14 (H3K14ac). Using H3K14Ac and PHF10 ChIP-seq, along with CLIP-seq in Caki2 renal cancer cells, we demonstrate here that the second and fourth bromodomains from PBRM1 also bind nucleic acids, selectively associating with double stranded RNA elements. Disruption of the RNA binding pocket is found to compromise PBRM1 chromatin binding and inhibit PBRM1-mediated cellular growth effects. Overall design: Examination of RNA binding partners of wildtype and BD2 mutant (SKY) PBRM1 using CLIP-seq in Caki2 renal cancer cells. Empty Vector is the control.
Sample: mBD2(SKY)-PBRM1- Replicate 1
SAMN32374318 • SRS16259983 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM6891181
Instrument: Illumina NovaSeq 6000
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Construction protocol: Cells were UV crosslinked and processed as described in the ECLIPSEBIO RBP-eCLIP kit Libraries were constructed according to the instructions in ECLIPSEBIO RBP-eCLIP kit CLIP-seq
Runs: 1 run, 24M spots, 7.2G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
SRR2286920424,011,4557.2G2.2Gb2023-02-24

ID:
25919096

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...