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SRX1865192: GSM2204549: Pemphigus populitransversus replicate 1; Pemphigus populitransversus; Bisulfite-Seq
1 ILLUMINA (NextSeq 500) run: 46,687 spots, 7M bases, 2.9Mb downloads

Submitted by: NCBI (GEO)
Study: Sociality and DNA methylation are not evolutionary dependent
show Abstracthide Abstract
DNA methylation is an important chromatin modification that is necessary for the structural integrity and proper regulation of the genome for many species. Despite its conservation across the tree of life, little is known about its contribution to complex traits. Reports that differences in DNA methylation between castes in closely related Hymenopteran insects (ants, bees and wasps) contributes to social behaviors has generated hypotheses on the role of DNA methylation in governing social behavior. However, social behavior has evolved multiple times across insecta, and a common role of DNA methylation in social behavior remains outstanding. Using phylogenetic comparative methods we sought to better understand patterns of DNA methylation and social behavior across insects. DNA methylation can be found in social and solitary insects from all orders, except Diptera (flies), which suggests a shared loss of DNA methylation within this order. The lack of DNA methylation is reflected in the absence of the maintenance and de novo DNA methyltransferases (DNMT) 1 and 3, respectively. Interestingly, DNA methylation is found in species without DNMT3. DNA methylation and social behavior (social/solitary) or with division of labor (caste+/caste–) for 123 insect species analyzed from 11 orders are not evolutionary dependent, which is further supported by sequencing of DNA methylomes from 40 species. Overall design: MethylC-Seq collected from a diverse collection of social and solitary insects
Sample: Pemphigus populitransversus replicate 1
SAMN05263688 • SRS1515962 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: Bisulfite-Seq
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Construction protocol: DNA was isolated using a Qiagen Dneasy Mini kit (Qiagen, Valencia, CA) following the manufacturer’s recommendations. Libraries were prepared following the steps provided in Urich et al. (2015; Nature Protocols)
Experiment attributes:
GEO Accession: GSM2204549
Links:
Runs: 1 run, 46,687 spots, 7M bases, 2.9Mb
Run# of Spots# of BasesSizePublished
SRR370298746,6877M2.9Mb2017-02-06

ID:
2661137

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