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SRX18439364: GSM6774200: 010-FD19-EfficacyW16; Macaca mulatta; RNA-Seq
8 ILLUMINA (Illumina HiSeq 3000) runs: 29M spots, 2.9G bases, 1Gb downloads

External Id: GSM6774200_r1
Submitted by: Genomics Core, Developmental and Cognitive Neuroscience, Yerkes National Primate Research Center
Study: Intradermal but not intramuscular MVA immunizations protect against intravaginal tier2 SHIV challenges in macaques
show Abstracthide Abstract
Route of immunization can markedly influence the quality of immune response. Here, we show that intradermal (ID) but not intramuscular (IM) modified vaccinia Ankara (MVA) vaccinations provide protection from acquisition of intravaginal tier2 SHIV challenges in female macaques. Both routes of vaccination induced comparable levels of serum IgG with neutralizing and non-neutralizing activities. The protection in MVA-ID group correlated positively with serum neutralizing and antibody-dependent phagocytic activities, and envelope-specific vaginal IgA; while the limited protection in MVA-IM group correlated only with serum neutralizing activity. MVA-ID immunizations induced greater germinal center Tfh and B cell responses, reduced the ratio of Th1 to Tfh cells in blood and showed lower activation of intermediate monocytes and inflammasome compared to MVA-IM immunizations. This lower innate activation correlated negatively with induction of Tfh responses. These data demonstrate that the MVA-ID vaccinations protect against intravaginal SHIV challenges by modulating the innate and T helper responses. Overall design: We vaccinated two groups of rhesus macaques with 10 animals per group using the DNA/MVA/Protein vaccine regimen. Animals in both groups were primed with DNA/SHIV-BG505-CD40L via the ID route and electroporation at weeks 0 and 8. At weeks 16 and 24, all animals were boosted with MVA/SHIV-BG505 delivered through either ID or IM routes.
Sample: 010-FD19-EfficacyW16
SAMN31951177 • SRS15921089 • All experiments • All runs
Organism: Macaca mulatta
Library:
Name: GSM6774200
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Blood was collected at specified time points post 1st MVA immunization into PAXgene Blood RNA tubes (BD Biosciences) and the RNA was extracted using the PAXgene Blood RNA Kit IVD (Qiagen). RNA quality was assessed using an Agilent Bioanalyzer and then one microgram of total RNA was subjected to globin transcript depletion using the GLOBINclear Kit, human (ThermoFisher Scientific). Ten nanograms of the globin-depleted RNA was used as input for cDNA synthesis using the Clontech SMART-Seq v4 Ultra Low Input RNA kit (Takara Bio), which uses oligo-dT priming for the reverse transcription step. This process would yield low recovery of non-coding RNAs and hence we focused our analysis on protein coding transcripts. Amplified cDNA was fragmented and appended with dual-indexed bar codes using the NexteraXT DNA Library Preparation kit (Illumina). Libraries were validated by capillary electrophoresis on an Agilent 4200 TapeStation, pooled at equimolar concentrations, and sequenced on an Illumina HiSeq3000 at 100SR, yielding 25-30 million reads per sample.
Runs: 8 runs, 29M spots, 2.9G bases, 1Gb
Run# of Spots# of BasesSizePublished
SRR224738863,570,797360.7M133.7Mb2023-07-27
SRR224738873,613,704365M134.5Mb2023-07-27
SRR224738883,672,683370.9M134.9Mb2023-07-27
SRR224738893,619,143365.5M133Mb2023-07-27
SRR224738903,657,951369.5M135Mb2023-07-27
SRR224738913,645,007368.1M134.8Mb2023-07-27
SRR224738923,601,263363.7M134.1Mb2023-07-27
SRR224738933,602,342363.8M134.7Mb2023-07-27

ID:
25467510

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