U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX18014855: GSM6672635: Colon tissue, model_1, rep2; mouse gut metagenome; OTHER
1 ILLUMINA (Illumina NovaSeq 6000) run: 117,996 spots, 59.2M bases, 18Mb downloads

External Id: GSM6672635_r1
Submitted by: Southwest Medical University
Study: Methyl Gallate Alleviates Acute Ulcerative Colitis by Modulating Gut Microbiota and Inhibiting TLR4/NF-?B Pathway [16S]
show Abstracthide Abstract
Ulcerative colitis (UC) is a complex immune-mediated inflammatory disease. In recent years, the incidence of UC has increased rapidly, however, its exact etiology and mechanism are still unclear. Based on the definite anti-inflammatory and antibacterial activities of Sanguisorba officinalis L., we studied its monomer methyl gallate (MG). In this study, we employed flow cytometry and detected nitric oxide production, finding MG regulated macrophage polarization and inhibited the expression of proinflammatory cytokines in vitro. MG also exhibited anti-inflammatory activity with ameliorating body weight loss, improving colon length and histological damage in dextran sulfate sodium-induced UC mice. Meanwhile, transcription sequencing and 16S rRNA sequencing analyzed the key signaling pathways and changes in the gut microbiota of MG for UC treatment, proving MG could alleviate inflammation by regulating the TLR4/NF-?B pathway in vivo and in vitro. Additionally, MG altered the diversity and composition of the gut microbiota and changed the abundance of metabolic products. In conclusion, our results are the first to demonstrate MG has obvious therapeutic effects against acute UC, which is related to macrophage polarization, improved intestinal flora dysbiosis and inhibition of TLR4/NF-?B signaling pathway activation, and may be a promising therapeutic agent for UC treatment. Overall design: Comparative gene expression profiling analysis of RNA-seq data for colon tissue (normal group, model group and MG groups).
Sample: Colon tissue, model_1, rep2
SAMN31428229 • SRS15523104 • All experiments • All runs
Library:
Name: GSM6672635
Instrument: Illumina NovaSeq 6000
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: the E.Z.N.A.® Soil DNA Kit (Omega Bio-Tek, Norcross, GA, USA) was used to extract the total genomic DNA from the colon. The RNA-seq transcriptome library was prepared following the TruSeqTM RNA Sample Preparation Kit from Illumina using 1 μg of total RNA
Runs: 1 run, 117,996 spots, 59.2M bases, 18Mb
Run# of Spots# of BasesSizePublished
SRR22033626117,99659.2M18Mb2024-05-31

ID:
24968124

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...