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SRX17970160: GSM6663257: inputDNA_Ctrl_rep2; Mus musculus; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 29.6M spots, 1.5G bases, 505.2Mb downloads

External Id: GSM6663257_r1
Submitted by: Maike Sander, University of California, San Diego
Study: Beta cell dysfunction and dedifferentiation induced by Bone Morphogenetic Protein (BMP)-2 is associated with histone modifications and decreased NeuroD1 chromatin binding [Histone ChIP-seq]
show Abstracthide Abstract
Insufficient insulin secretion is a hallmark of type 2 diabetes and has been attributed to beta cell identity loss characterized by decreased expression of several key beta cell genes. The pro-inflammatory factor BMP-2 is upregulated in islets of Langerhans from diabetic individuals and acts as an inhibitor of beta cell function and proliferation. Exposure to BMP-2 induces expression of Id1-4, Hes-1 and Hey-1, transcriptional regulators associated with loss of differentiation. The aim of this study was to investigate the mechanism of BMP-2 induced beta cell dysfunction and maturity. Mouse islets exposed to BMP-2 for 10 days showed impaired insulin secretion and beta cell proliferation. BMP-2-induced beta cell dysfunction was associated with decreased expression of beta cell specific identity and proliferation markers such as Ins1, Ucn3 and Ki67 but increased expression of Id1-4, Hes-1 and Hey-1. Top 30 most regulated proteins significantly correlated with corresponding mRNA expression. BMP-2 induced gene expression changes were associated with a predominant reduction in acetylation of H3K27 and a decrease in NeuroD1 chromatin binding activity. These results show that BMP-2-induced beta cell dysfunction is associated with epigenetic changes, predominantly a reduction in H3K27ac and a decrease in NeuroD1 DNA binding resulting in altered beta cell gene expression. Overall design: Examination of 3 histone modifications (H3K27ac; H3K27me3 and H3K4me3) in primary mouse islets exposed or non-exposed to BMP2 for 10 days
Sample: inputDNA_Ctrl_rep2
SAMN31391498 • SRS15486432 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6663257
Instrument: Illumina HiSeq 4000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: After sonication chromatin immunoprecipitation was performed using ChIP-IT High Sensitivit (Active Motif). Histone-DNA complexes were isolated with the corresponding antibody. Libraries were prepared using KAPA DNA Library Preparation Kits for Illumina.
Runs: 1 run, 29.6M spots, 1.5G bases, 505.2Mb
Run# of Spots# of BasesSizePublished
SRR2198767929,630,9271.5G505.2Mb2023-07-12

ID:
24921231

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