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SRX17676019: GSM6596998: RNA-Seq of Triticum aestivum :His control_1; Triticum aestivum; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 22.4M spots, 6.7G bases, 4Gb downloads

External Id: GSM6596998_r1
Submitted by: Nanjing Agricultural University
Study: Bivalent histone modification of BCG1 enables fungal pathogen to evade host immunity (RNA-Seq)
show Abstracthide Abstract
Bivalent chromatin modification containing opposing H3K4me3 and H3K27me3 marks controls various biological processes by fine-tuning gene expression in animals and plants, however how this bivalent modification regulates pathogenicity of fungal pathogen remains exclusive. Here, we provided a genome-wide landscape of H3K4me3 and H3K27me3 of wheat head blight fungus Fusarium graminearum (Fg), leading to the identification of infection-induced bivalent chromatin-marked genes (BCGs). Among those, BCG1, which encodes a novel xylanase with a G/Q rich motif, is required for the full virulence of Fg pathogenicity through degradation of host cell wall. However, the G/Q rich motif is recognized by pattern-recognition receptors and triggers plant innate immunity. Further data illustrates that Fg employs H3K4me3 modification to induce BCG1 expression rapidly during the early infection, and then switches to bivalent H3K4me3-H3K27me3 chromatin state that renders rapid epigenetic silencing of BCG1 for escaping from host immune monitor, therefore leading to the successful invasion. Collectively, our study highlights the molecular mechanism of how fungal pathogen employs bivalent epigenetic modification to facilitate the successful infection by escaping of host immunity, which provides conceptual insights into plant-microbe interaction. Overall design: Comparative gene expression of RNA-seq data for Wild type PH-1at different hour post-infection .
Sample: RNA-Seq of Triticum aestivum :His control_1
SAMN30964036 • SRS15207902 • All experiments • All runs
Library:
Name: GSM6596998
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: total RNA extraction using TRIZOL reagent following the manufacturer's instructions. After total RNA was extracted, eukaryotic mRNA was enriched by Oligo(dT) beads, while prokaryotic mRNA was enriched by removing rRNA by Ribo-ZeroTM Magnetic Kit (Epicentre, Madison, WI, USA). Then the enriched mRNA was fragmented into short fragments using fragmentation buffer and reverse transcripted into cDNA with random primers. Second-strand cDNA were synthesized by DNA polymerase I, RNase H, dNTP and buffer. Then the cDNA fragments were purified with QiaQuick PCR extraction kit(Qiagen, Venlo, The Netherlands), end repaired, poly(A) added, and ligated to Illumina sequencing adapters.
Runs: 1 run, 22.4M spots, 6.7G bases, 4Gb
Run# of Spots# of BasesSizePublished
SRR2167771122,446,9456.7G4Gb2023-12-04

ID:
24575829

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