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SRX17420682: GSM6543029: Human meningoma, QM221; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 111.4M spots, 33.4G bases, 9.7Gb downloads

Submitted by: NCBI (GEO)
Study: Hypermitotic meningiomas harbor DNA methylation subgroups with distinct biological and clinical features
show Abstracthide Abstract
This study reports clinical, genetic, epigenetic, gene expression, and cellular features distinguishing meningioma DNA methylation subgroups within meningioma DNA methylation groups. We present these data in the context of molecular and clinical models predicting postoperative outcomes across 565 meningiomas with comprehensive clinical follow-up from independent discovery and validation institutions. By discovering meningioma DNA methylation subgroups within meningioma DNA methylation groups, we provide an opportunity to resolve inconsistencies in the recent literature. In doing so, our study establishes an architecture that unifies opposing biological theories for the most common primary intracranial tumor Overall design: RNA-sequencing data is used to examine transcriptional signatures of meningioma subgroups in the context of methylation classification.
Sample: Human meningoma, QM221
SAMN30670204 • SRS14977157 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: cDNA
Layout: PAIRED
Construction protocol: Frozen meningiomas were mechanically lysed using a TissueLyser II (QIAGEN) according to the manufacturer's instructions. RNA were extracted from lysed tissue using the AllPrep DNA/RNA/miRNA Universal Kit (#80224, QIAGEN). RNA quality were initially assessed using a NanoDrop One (Thermo Fisher Scientific). RNA samples with 260/280 values less than 1.8 or 260/230 values less than 1.6 were cleaned using the RNA Cleanup protocol from the RNeasy Mini Kit (#74106, QIAGEN). library preparation was performed using the TruSeq Standard mRNA Kit (#20020595, Illumina)
Experiment attributes:
GEO Accession: GSM6543029
Links:
Runs: 1 run, 111.4M spots, 33.4G bases, 9.7Gb
Run# of Spots# of BasesSizePublished
SRR21416289111,405,05033.4G9.7Gb2022-11-15

ID:
24250189

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