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SRX17320966: GSM6523577: pooled (20) whole embryos solvent control RepD; Pimephales promelas; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 105.5M spots, 21.3G bases, 6.3Gb downloads

External Id: GSM6523577_r1
Submitted by: Toxicology, University of Saskatchewan
Study: Embryo/ larval toxicity and key gene expression signatures of maternally transferred hexabromocyclododecane (HBCD) in Pimephales promelas
show Abstracthide Abstract
Hexabromocyclododecane (HBCD) is a brominated flame retardant that presents a threat to aquatic organisms as it can be maternally transferred and has been reported to hinder development and survival in early-life stage (ELS) fish. However, little is known to date regarding the molecular mechanisms that drive the toxicity of HBCD. This study examined the apical and molecular response patterns of maternally transferred HBCD in fathead minnow (Pimephales promelas) larvae at seven (whole transcriptome) and 14 (apical and physiological) days post-fertilization. The larvae sampled at 7dpf for whole transcriptomics analysis revealed dysregulation of pathways involved in membrane integrity (inhibition of calcium channel) and metabolic processes (downregulation of amino acid, glucose, and lipid biosynthesis), while the larvae reared for 14 days exhibited a significant decrease in survival at the highest treatment condition. These results indicate that maternal transfer of HBCD is of concern in fish, which may act through indirect mechanisms involving the inhibition of membrane transport leading to disruption in metabolic processes, collectively resulting in energy depletion and subsequently mortality. Overall design: Adult fathead minnows were exposed to solvent control (ethanol-evaporated), 11.5, 36.4, 106 mg hexabromocyclododecane /kg food (wet weight) for 49 days. Fertilized eggs were obtained between day 25 and 42 of the adult dietary HBCD exposure. Fathead minnow larvae were sampled 7 days post-fertilization (pools of 20 larvae per sample) at measured concentrations of <LOD, 0.576, 1.77, 5.89 mg hexabromocyclododecane/ kg (wet weight). mRNA profiles were done on composite samples of whole fathead minnow larvae from the solvent control, low, and medium treatment conditions (the high treatment group was not subjected to this analysis due to significant mortality. Treatment groups have 5 replicates each.
Sample: pooled (20) whole embryos solvent control RepD
SAMN30589524 • SRS14881261 • All experiments • All runs
Library:
Name: GSM6523577
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from pools of 20 larvae using QIAGEN RNeasy plus universal mini kit following the manufacturer's protocol Libraries were generated from 250 ng of total RNA. mRNA enrichment was performed using the NEBNext Poly(A) Magnetic Isolation Module (New England BioLabs). cDNA synthesis was achieved with the NEBNext RNA First Strand Synthesis and NEBNext Ultra Directional RNA Second Strand Synthesis Modules (New England BioLabs). The remaining steps were done using NEBNext Ultra II DNA Library Prep Kit for Illumina (New England BioLabs). Adapters and PCR primers were purchased from New England BioLabs. Libraries were quantified using the Kapa Illumina GA with Revised Primers-SYBR Fast Universal kit (Kapa Biosystems). Average size fragment was determined using a LabChip GX (PerkinElmer) instrument.
Runs: 1 run, 105.5M spots, 21.3G bases, 6.3Gb
Run# of Spots# of BasesSizePublished
SRR21314763105,457,84721.3G6.3Gb2022-09-02

ID:
24141907

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