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SRX16542937: GSM6368961: Exp3-TTS(Mono)-R1; Campylobacter jejuni; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 20.7M spots, 1.6G bases, 648.6Mb downloads

External Id: GSM6368961_r1
Submitted by: Bioinformatics Group (AG Backofen), Department of Computer Science, Albert-Ludwigs-University Freiburg
Study: Complementary Ribo-seq approaches refine the translatome and provide a small protein census in a bacterial pathogen
PRJNA860962 • SRP387753 • All experiments • All runs
show Abstracthide Abstract
Three translatomic approaches were applied to the foodborne pathogen Campylobacter jejuni to identify translated open reading frames, start codons, and stop codons and reveal novel small proteins Overall design: Total RNA-seq, ribosome profiling, TIS (translation initiation site) profiling (retapamulin and oncocin), and TTS (translation termination site) profiling (apidaecin 137; monosomes and disomes) using apidaecin in Campylobacter jejuni NCTC11168
Sample: Exp3-TTS(Mono)-R1
SAMN29872826 • SRS14177939 • All experiments • All runs
Organism: Campylobacter jejuni
Library:
Name: GSM6368961
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: size-selected RNA from rRNA depleted total RNA or ribosome footprints generated bz micrococcal nuclease small RNA or adaptor ligation protocol
Runs: 1 run, 20.7M spots, 1.6G bases, 648.6Mb
Run# of Spots# of BasesSizePublished
SRR2051910520,739,6361.6G648.6Mb2024-05-23

ID:
23272058

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