GSM6368959: Exp3-RIBO-R1 ; Campylobacter jejuni; RNA-Seq - SRA

SRX16542935: GSM6368959: Exp3-RIBO-R1 ; Campylobacter jejuni; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 19.4M spots, 1.5G bases, 611.4Mb downloads

External Id: GSM6368959_r1

Submitted by: Bioinformatics Group (AG Backofen), Department of Computer Science, Albert-Ludwigs-University Freiburg

Study: Complementary Ribo-seq approaches refine the translatome and provide a small protein census in a bacterial pathogen

PRJNA860962 • SRP387753 • All experiments • All runs

show Abstracthide Abstract

Three translatomic approaches were applied to the foodborne pathogen Campylobacter jejuni to identify translated open reading frames, start codons, and stop codons and reveal novel small proteins Overall design: Total RNA-seq, ribosome profiling, TIS (translation initiation site) profiling (retapamulin and oncocin), and TTS (translation termination site) profiling (apidaecin 137; monosomes and disomes) using apidaecin in Campylobacter jejuni NCTC11168

Sample: Exp3-RIBO-R1

SAMN29872828 • SRS14177937 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: GSM6368959

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: size-selected RNA from rRNA depleted total RNA or ribosome footprints generated bz micrococcal nuclease small RNA or adaptor ligation protocol

Runs: 1 run, 19.4M spots, 1.5G bases, 611.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR20519107	19,431,338	1.5G	611.4Mb	2024-05-23

ID:: 23272056

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