GSM6281533: K112; Ictidomys tridecemlineatus; RNA-Seq - SRA

SRX15944563: GSM6281533: K112; Ictidomys tridecemlineatus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 33.7M spots, 4.4G bases, 1.5Gb downloads

External Id: GSM6281533_r1

Submitted by: University of Colorado Anschutz Medical Campus

Study: Kidney gene expression dynamics during torpor-arousal cycles in hibernating 13-lined ground squirrels

PRJNA943230 • SRP426638 • All experiments • All runs

show Abstracthide Abstract

RNA-seq libraries were prepared from replicate samples (n=5-6) from six physiolocial groups to capture key changes in circannual hibernation. Overall design: RNA-seq libraries were prepared from replicate samples (n=5-6) in the kidney from six physiological groups to capture key changes in circannual hibernation.

Sample: K112

SAMN29420931 • SRS13631540 • All experiments • All runs

Organism: Ictidomys tridecemlineatus

Library:

Name: GSM6281533

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: RNA extracted by homogenization with polytron in trizol, cleaned up with Direct-zol RNA MiniPrep Kit (Zymo Research) Libraries were prepared using either the TruSeq Stranded mRNA Library Prep Kit (Illumina) or the Universal Plus mRNA Sequencing Kit (Nugen) as indicated in the sample metadata.

Runs: 1 run, 33.7M spots, 4.4G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR19901697	33,741,944	4.4G	1.5Gb	2024-06-01

ID:: 22612541

SRA

Sequence Read Archive

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