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SRX15780013: GSM6251632: hESCs, Day0, Bio rep 3; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 23.4M spots, 7G bases, 2.2Gb downloads

External Id: GSM6251632_r1
Submitted by: Tongji University
Study: Generation of a TPH2-EGFP reporter cell line for Purification and Monitoring of Human Serotonin neurons in vitro and in vivo
show Abstracthide Abstract
Generation of serotonin neurons (SNs) from human pluripotent stem cells (hPSCs) provides a promising platform to explore the mechanisms of serotonin-associated neuropsychiatric disorders. However, neural differentiation always yields heterogeneous cell populations, making it difficult to identify and purify SNs in vitro or track them in vivo following transplantation. Herein, we generated a TPH2-EGFP reporter hPSC line with insertion of EGFP into the endogenous tryptophan hydroxylase 2 (TPH2) locus using CRISPR-Cas9-mediated gene editing technology. This TPH2-reporter, which faithfully indicated TPH2 expression during differentiation, enabled us to obtain purified SNs for subsequent transcriptional analysis and study of pharmacological responses to antidepressants. In addition, the reporter system showed strong EGFP expression to indicate SNs, which enabled us to explore in vitro and ex vivo electrophysiological properties of SNs. In conclusion, this TPH2-EGFP reporter cell line might be of great significance for studies on human SN-related development and differentiation, drug screening, disease modeling, and cell replacement therapies. Overall design: Comparative gene expression profiling of RNA-seq data from cells differentiated from hESCs to human serotonin neurons at three time points (Day0 (hESCs), Day21, Day42)
Sample: hESCs, Day0, Bio rep 3
SAMN29176512 • SRS13473215 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM6251632
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using Trizol reagent (Invitrogen, CA, USA) following the manufacturer's procedure. Approximately 10 ng of total RNA was used for the construction of sequencing libraries. RNA libraries for RNA-seq were prepared using NEBNext Single Cell/Low Input RNA Library Prep Kit for Illumina(NEB,UK)following manufacturer's protocols.
Runs: 1 run, 23.4M spots, 7G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
SRR1973370623,442,6477G2.2Gb2022-09-22

ID:
22426529

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