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SRX15670529: GSM6234666: LN_CD8_Ramp1 WT..B16_rep2; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 5.6M spots, 421.9M bases, 169.9Mb downloads

External Id: GSM6234666_r1
Submitted by: pharmacology, university of Montreal
Study: Nociceptor neurons affect cancer immunosurveillance [RNA-seq 1]
show Abstracthide Abstract
Neuron, melanoma and CD8 co-cultures Overall design: Naive splenocyte CD8+ T-cells were FACS-purified from RAMP1wt (CD45.1+) or RAMP1-/- (CD45.2+) mice, cultured and amplified. 8-week-old female RAG1-/- mice were transplanted (i.v., 2.5x106 cells) with either of RAMP1-/- or RAMP1wt CD8+ T-cells or 1:1 mix of 5x106 RAMP1-/- and RAMP1wt CD8+ T-cells. One week post transplantation, the mice were inoculated with B16F10-mCherry-OVA cells (5x105 cells; i.d.). On day 14, tumor and draining lymph node were harvested, and RAMP1-/- (CD45.2+) and RAMP1wt (CD45.1+) CD8+ T-cells were FACS-purified and RNA sequenced.
Sample: LN_CD8_Ramp1 WT..B16_rep2
SAMN28968160 • SRS13368755 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6234666
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total CD8+ T-cells were isolated from the spleen of wild-type (CD45.1+) or RAMP1-/- (CD45.2+) mice, expanded and amplified in vitro using a mouse T-cell Activation/Expansion Kit (Miltenyi cat #130-093-627). CD8+ cells from RAMP1-/- and RAMP1wt were injected separately or 1:1 mix through tail vein of Rag1-/- mice. One week after, the mice were inoculated with B16F10-OVA-mCherry cancer cells (5 × 105), and tumor growth was measured daily using a handheld digital caliper. On day 14, tumor and draining lymph node were harvested, and RAMP1-/- (CD45.2+) and RAMP1wt (CD45.1+) CD8+ T-cells were FACS-purified using a FACSAria IIu cell sorter (Becton Dickinson). For FACS-purified cells, RAMP1-/- and RAMP1wt CD8+ T-cells RNA-seq libraries were constructed using KAPA Hyperprep RNA (1x75bp) following the manufacturer's instructions.
Runs: 1 run, 5.6M spots, 421.9M bases, 169.9Mb
Run# of Spots# of BasesSizePublished
SRR196198375,625,788421.9M169.9Mb2022-08-10

ID:
22294052

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