U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX15657730: GSM6053017: T12869; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 9.2M spots, 2.8G bases, 1Gb downloads

External Id: GSM6053017_r1
Submitted by: LHC, CCR, National Cancer Institue
Study: Association of gene expression with Creatine Riboside, A Prognostic Metabolite of Metabolome Imbalance in the NCI-MD Non-Small Cell Lung Cancer Cohort
show Abstracthide Abstract
The metabolic dependencies of cancer cells have significant potential to be exploited to improve the diagnosis and treatment of cancer. Creatine riboside (CR) is a novel urinary metabolite associated with risk and prognosis in lung and liver cancer. However, the source of high creatine riboside levels in cancer patients, as well as its implications for the treatment of these aggressive cancers remain unclear. By integrating RNA sequencing and whole exome sequencing of non-small cell lung cancer tissues we sought to understand the source of creatine riboside and the tumor biology associated with this novel metabolite. Utilising multiple lung and liver cancer cohorts, next generation sequencing data was combined with global metabolomics analysis of human tumors, and matched liquid biopsies together with functional studies to reveal that dysregulation of the mitochondrial urea cycle and nucleotide imbalance are associated with high creatine riboside levels and are indicators of poor prognosis. Creatine riboside-high cancer cells were auxotrophic for arginine, revealing a metabolic vulnerability that may be exploited therapeutically. This highlights the potential of creatine riboside not only as a poor prognosis biomarker but also as a companion biomarker to inform the administration of arginine-targeted therapies in precision medicine strategies to improve cancer patient survival. Overall design: non-small cell lung cancer tissues were analysed by RNA sequencing.
Sample: T12869
SAMN27724644 • SRS13356576 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM6053017
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from frozen lung tissues using TRIzol (Invitrogen) according to the manufacturer's protocol. Only RNA samples with RNA sufficient RNA were included for analysis. Libraries suitable for paired-ended sequencing were generated using Illumina's TruSeq Stranded Total RNA Library Prep Kit.
Runs: 1 run, 9.2M spots, 2.8G bases, 1Gb
Run# of Spots# of BasesSizePublished
SRR196044549,175,4892.8G1Gb2022-06-10

ID:
22277894

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...