U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1564693: GSM2055669: WT 6h Refed; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 24.8M spots, 2.5G bases, 278.5Mb downloads

Submitted by: NCBI (GEO)
Study: FoxO1 Deacetylation Decreases Fatty Acid Oxidation in beta-cells and Sustains Insulin Secretion in Diabetes
show Abstracthide Abstract
Pancreatic beta-cell dysfunction contributes to onset and progression of type 2 diabetes. In this state beta-cells become metabolically inflexible, losing the ability to select between carbohydrates and lipids as substrates for mitochondrial oxidation. These changes lead to beta-cell dedifferentiation. We have proposed that FoxO proteins are activated through deacetylation-dependent nuclear translocation to forestall the progression of these abnormalities. However, how deacetylated FoxO exert their actions remains unclear. To address this question, we analyzed islet function in mice homozygous for knock-in alleles encoding deacetylated FoxO1 (6KR). Islets expressing 6KR mutant FoxO1 have enhanced insulin secretion in vivo and ex vivo, and decreased fatty acid oxidation ex vivo. Remarkably, the gene expression signature associated with FoxO1 deacetylation differs from wild-type by only ~2% of the > 4,000 genes regulated in response to re-feeding. But this narrow swath includes key genes required for beta-cell identity, lipid metabolism, and mitochondrial fatty acid and solute transport. The data support the notion that deacetylated FoxO1 protects beta-cell function by limiting mitochondrial lipid utilization, and raise the possibility that inhibition of fatty acid oxidation in ß-cells is beneficial to diabetes treatment. Overall design: Examined 2 different feeding state and 2 different genotypes
Sample: WT 6h Refed
SAMN04479238 • SRS1278987 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Isolated primary islets from 3 WT and 3 KR mutant mice after 24 hr-fasted or 24 hr-fasted followed by 6 hr-refeeding were combined per genotype and total RNA isolation was performed using RNeasy Mini Kit (QIAGEN). We use poly-A pull-down to enrich mRNAs from total RNA samples (200ng-1ug per sample, RIN>8 required) and proceed on library preparation by using Illumina TruSeq RNA prep kit.
Experiment attributes:
GEO Accession: GSM2055669
Links:
Runs: 1 run, 24.8M spots, 2.5G bases, 278.5Mb
Run# of Spots# of BasesSizePublished
SRR315163724,805,3882.5G278.5Mb2016-05-10

ID:
2214314

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...