U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1553672: GSM2051323: Female 2-rRNA; Plasmodium falciparum; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 14.5M spots, 1.4G bases, 921.5Mb downloads

Submitted by: NCBI (GEO)
Study: Next generation sequencing analysis of transcriptomes of Plasmodium falciparum male and female gametocytes
show Abstracthide Abstract
Investigation of overall expression level in Plasmodium falciparum male and female mature gametocytes, and detection of any transcriptional differences between male and female gametocytes. The Plasmodium falciparum parasite with green fluorescent protein (GFP) expression under the control of alpha tubulin II promoter facilitated the separation of male and female gametocyte. This engineered parasite strain in this study are further described in Miao J, Fan Q, Parker D, Li X, Li J, et al. (2013) Puf Mediates Translation Repression of Transmission-Blocking Vaccine Candidates in Malaria Parasites. PLoS Pathog 9(4): e1003268. doi: 10.1371/journal.ppat.1003268 Overall design: A 12 RNA-seq study was performed. Based on GFP intensity, equal number (4-5.5 X 10 6 ) of mature male and female gametocytes were separated by cell-sorter. Total RNA with and without rRNA depletion were processed for generation libraries using the Illumina TruSeq Stranded mRNA Library Preparation kit (Illumina Inc., San Diego, CA). Libraries were sequenced on an Illumina HiSeq 2500 in Rapid Run mode using 100 nucleotide single read sequencing. Altogether, this study investigated three experimental replicates of transcriptomes for mRNA and rRNA from male and female gametocytes (12 samples)
Sample: Female 2-rRNA
SAMN04448320 • SRS1269577 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: The male and female gametocytes were separated by cell-sorter based on GFP intensity. Total RNA was extracted using the Trizol reagent (invirtogen.com) Labeling was done by Genomics Core Facility of Pennsylvania State Univerity. Total RNA with and without rRNA depletion were processed for generation libraries using the Illumina TruSeq Stranded mRNA Library Preparation kit (Illumina Inc., San Diego, CA).
Experiment attributes:
GEO Accession: GSM2051323
Links:
Runs: 1 run, 14.5M spots, 1.4G bases, 921.5Mb
Run# of Spots# of BasesSizePublished
SRR313467114,497,9301.4G921.5Mb2016-02-01

ID:
2197826

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...